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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla023449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Nin-like | ||||||||
Protein Properties | Length: 911aa MW: 101499 Da PI: 6.5338 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.7 | 5.6e-29 | 592 | 641 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Cla023449 592 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 641 89**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.507 | 580 | 661 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.7E-25 | 593 | 641 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.23E-21 | 814 | 897 | No hit | No description |
SMART | SM00666 | 5.1E-26 | 814 | 897 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.129 | 814 | 897 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 3.6E-23 | 816 | 893 | No hit | No description |
CDD | cd06407 | 2.46E-38 | 816 | 895 | No hit | No description |
Pfam | PF00564 | 1.9E-18 | 816 | 896 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MDDGMLSPAT MLDAPADTAM DLDYMDGLLL DGCWLETADG TEFLHTSPSS FGVNLDPLIG 60 WPATEMNGDF NMTQITRSNQ EEPRKILTDE MSLGRKRIDM GQEGCSGQSE NNGFEGSELC 120 RRLWIGPGEH LGSATSVMER LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLT KYRDVSVKYE FTADEDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV 300 IGHPNKKVFN RSNEAVLSEI QNTLKVACET HGLPLAQTWA SCIQQSREGC RHSDENYSCC 360 VSTVDRACFV ADQRIQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS 420 HHAKLFGLHA AVAIRLRCIY ISKTDFVLEF FLPVNCRDPE EQRVLLTSLS TIIQRSCRSL 480 RLVTDKECRE ENMQQSCRSL HLVTDVKLGE ESNFPFGEAG LIANERSGMQ EMSKGGKTSE 540 VLSSSGYQHH EFNYDLNGVV EDSEECATVG NGSFSDVGLG RAGEKRRTKV DKTITLQVLR 600 QYFAGSLKDA AKSIGVCPTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQL VIDSVEGASG 660 AFQIGSLYSN FQELASPNLS GSGPPFSAKM GDCLKTSNNQ NEVGMSNLQG AASKSPSSSC 720 SQSSSSSQCF SSRSHQNPPH WNETGSEDQM GGDNPCDGEL KRVKSEVEIH VSIMEGSNVP 780 RRSQSCKSLC KHPPTECLMH SAKESNGMAE TVEVQRVKVS FGEEKIRFRV HNRWRYEELL 840 NEIAKRFSIS DISKFDLKYL DDESEWVLLT SDTDLQECFH VYKSSQVQTI KLSLQVSRRH 900 KRTSLASSGF S |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452962.1 | 0.0 | PREDICTED: protein NLP4 isoform X3 | ||||
TrEMBL | A0A1S3BUI7 | 0.0 | A0A1S3BUI7_CUCME; protein NLP4 isoform X3 | ||||
STRING | XP_004145599.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1237 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |