PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla023374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | SBP | ||||||||
Protein Properties | Length: 202aa MW: 22603.1 Da PI: 9.155 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133 | 9.9e-42 | 78 | 154 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+++C++dlseak+yhrrhkvCe+hska+vv+v+g++qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++a Cla023374 78 CQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSA 154 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.9E-34 | 71 | 139 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.214 | 75 | 152 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.06E-38 | 76 | 155 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-31 | 78 | 151 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEAKSFEGKH NFKDKPYKEG MVDDDLEYET EEEEVGGGGH GGSNACNALG YFENEKKKRG 60 AAVSGRGRSG GGISSPSCQA HNCATDLSEA KRYHRRHKVC EFHSKAAVVM VAGIRQRFCQ 120 QCSRFHELTE FDEAKRSCRR RLAGHNERRR KSSAECQGES TSRKGSAPQS KESHCRQLVE 180 DQRSRIQMAP PGSSGYKHLH IR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-34 | 69 | 151 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681862 | 1e-103 | LN681862.1 Cucumis melo genomic scaffold, anchoredscaffold00081. | |||
GenBank | LN713261 | 1e-103 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022937043.1 | 1e-129 | squamosa promoter-binding protein 1-like | ||||
Refseq | XP_023536105.1 | 1e-129 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q9S758 | 4e-41 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A0A0L3D9 | 1e-114 | A0A0A0L3D9_CUCSA; Squamosa promoter-binding protein | ||||
STRING | XP_004165557.1 | 1e-115 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 3e-42 | squamosa promoter binding protein-like 5 |
Publications ? help Back to Top | |||
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