PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023247
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 575aa    MW: 62911.8 Da    PI: 7.0611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023247genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.5e-16356402455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRR+riN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Cla023247 356 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 402
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-21349416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.59352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-20356410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-14356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.44E-9366406No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MNYCFPDWNF EGDLPPANHK KSMGPEHDDL VELLWRNGQV VLQSQKAKKP SLIANEVRQF  60
QKQNQPLYRS NVSCGNSSNL IQDDETVSWI QDPLDDSFEK EFCSNFFSEL PPADPIEIVK  120
QPIKHFQDDK QTRFGAFDTA THVTFGNSLK KNSKPPAALA EIPMNTMPPP RFQFPDSTRQ  180
AKDLGDLGKL VNFSQVPVPL KGDLGSSNGG RECGNLIQGE GRDCSAMTVG SSHCGSNQVP  240
NPNDLDVSRV STSGFGNAGL SAGLSKEDNR KMVAQGERDK IETMDPTATS SSGGSGSSMD  300
RSRTIGQSTG GNSNKRKGRD GEESECQSET AELESAEGNK AAPRSGSSRR TRAAEVHNLS  360
ERRRRERINE KMKALQELIP HCNKTDKASM LDEAIEYLKS LQLQLQVMWM GSGMAPMMFP  420
GIQHYMSRMA MGMGMAQPSM PSIHNSMQLP RVPIVDQSVS VAPTPNQPMM CQPQIFNPMN  480
YQNQMQNPAL QEQYARLMGF HHMQPTSQPI NVFRFCPSAV LQSQTAAAPG PACGSTAGGS  540
IANDIVNANL VIQLLSKSNI FTKVPVSGGR RGGDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365ERRRRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818640.0LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653988.10.0PREDICTED: transcription factor PIF5-like
RefseqXP_011653989.10.0PREDICTED: transcription factor PIF5-like
TrEMBLA0A0A0KZR20.0A0A0A0KZR2_CUCSA; Uncharacterized protein
STRINGXP_004162571.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.25e-61phytochrome interacting factor 4