PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023058
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 261aa    MW: 29005.8 Da    PI: 4.8753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023058genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07204232129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r++W++ Ed+ l  av++ G g+W+ I +
        Cla023058 204 RKPWSKAEDLELMAAVEKCGEGNWANILK 232
                      789***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.632199252IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-11200246IPR009057Homeodomain-like
SuperFamilySSF466892.37E-9202252IPR009057Homeodomain-like
SMARTSM007177.6E-4203254IPR001005SANT/Myb domain
PfamPF002495.1E-6204232IPR001005SANT/Myb domain
CDDcd116601.90E-11205246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MIERKEKQRT GTISMEDCST LLERYSVRTI FTLLREVAQV SGVRIDWDKL VKNTSTGISN  60
VREYQLLWRH LAYRHTLLEN MDSVTDPLDY DSDLDFEIEP FPSVSSESSY EAAACVKVLI  120
ANGIPSESDV PTSSAVEAPL TIGISNSQAS TDNLKNPQYA CLMQGMSVTI PLSIQRQPIP  180
MAAATEVFDV NGAAGANAAS QKRRKPWSKA EDLELMAAVE KCGEGNWANI LKGDFKGDRT  240
ASQLSQVFFH TFFRCYSPPF F
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-136LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-136LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022937359.11e-151uncharacterized protein LOC111443670 isoform X1
RefseqXP_022937360.11e-151uncharacterized protein LOC111443670 isoform X1
RefseqXP_022937361.11e-151uncharacterized protein LOC111443670 isoform X1
TrEMBLA0A1S3CQJ61e-141A0A1S3CQJ6_CUCME; uncharacterized protein LOC103503656 isoform X1
STRINGXP_008466159.11e-142(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-64MYB_related family protein