PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla022679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 21113 Da PI: 7.6232 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.2 | 1.2e-32 | 29 | 125 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++rrkC++dC+lapyfpa++ ++f+nv+klFG+++vlk+l++l++++r +a++++++eA++ra+d G++++i +lq+++ l+a+ + Cla022679 29 ACAACKFQRRKCSADCPLAPYFPAHRVQDFQNVRKLFGVKKVLKTLADLEPDNRFKAVECIIFEANCRASDLAGGCYKIICELQSEITLLEAQHRIV 125 7***************************************************************************************999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.195 | 28 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-32 | 29 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNISGDSSGT AAEEGGVKDN NNHPTTQAAC AACKFQRRKC SADCPLAPYF PAHRVQDFQN 60 VRKLFGVKKV LKTLADLEPD NRFKAVECII FEANCRASDL AGGCYKIICE LQSEITLLEA 120 QHRIVLRQLR YCRQTAAISQ SGATSSEFDF NWKPGLISED WIRKENCNLN DRLTMMENEV 180 SFFKALTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-20 | 24 | 127 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-20 | 24 | 127 | 6 | 113 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022962555.1 | 5e-78 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A0A0LNK6 | 2e-72 | A0A0A0LNK6_CUCSA; Uncharacterized protein | ||||
STRING | XP_008444461.1 | 8e-72 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-28 | LOB domain-containing protein 22 |