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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla022660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 23660.8 Da PI: 8.5882 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.9e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +v+ +G+ tW + + + g++R++k+c++rw++yl Cla022660 14 KGPWSPDEDAILKSYVETHGTAgTWIALPTKAGLKRCGKSCRLRWLNYL 62 79******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.4e-15 | 69 | 114 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + ++ +q+G++ W+tIa+ ++ gRt++++k++w++ Cla022660 69 GDFTEEEDNVIFNLYNQYGSRqvLWSTIASQLP-GRTDNDVKNHWNT 114 789******************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.558 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-25 | 12 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.76E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.55 | 63 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-12 | 67 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-13 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 70 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRAPCCEKG KVKKGPWSPD EDAILKSYVE THGTAGTWIA LPTKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEEEDNVIF NLYNQYGSRQ VLWSTIASQL PGRTDNDVKN HWNTKLKKKK 120 LFLAGKTKLQ TQTQTHLRSK PSLLHAPETE FTETTNHRPI SYFAGLDNSV DQLESFSEPG 180 AGGDGRDQWG SMEHWGCDFP PDMICSMLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-24 | 14 | 119 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-50 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-50 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142913.1 | 1e-114 | PREDICTED: transcription factor RAX3 | ||||
Swissprot | Q9SJL7 | 9e-62 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A0A0LR01 | 1e-112 | A0A0A0LR01_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170771.1 | 1e-113 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-60 | myb domain protein 84 |
Publications ? help Back to Top | |||
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