PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022655
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 296aa    MW: 33965.1 Da    PI: 7.5275
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022655genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.2e-123577246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        Cla022655 35 GGFSEEEDRIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 77
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.356128IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-111541IPR009057Homeodomain-like
SuperFamilySSF466895.01E-211583IPR009057Homeodomain-like
PROSITE profilePS5129421.7492983IPR017930Myb domain
SMARTSM007175.7E-113381IPR001005SANT/Myb domain
PfamPF002491.5E-103577IPR001005SANT/Myb domain
CDDcd001675.40E-83779No hitNo description
Gene3DG3DSA:1.10.10.601.8E-184280IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MELVATGLLC LKKLRCGKSC RLRWLNYLRP NIKHGGFSEE EDRIICSLYV SIGSRWSIIA  60
AQLPGRTDND IKNYWNTRLK KKLFGKQRKD HQQQAITRRG NGLKQMQQMK RSSENNNTTT  120
TITHMGENNS AIFSLNQSHN NNILPYWPQQ QHLPLASHYN NLPPSFGKPI ENDLSKFGVQ  180
FMDQESVYSN NHGNEYGNFL PVIQGQSSNS NSQMVEVENY NMATYEDPRR VLCGLEFLYG  240
DHQIMSGNND QMGSLQISSC LPNYEEILLQ DLSTTTTTQE YEAKFDDLRI LDNNAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19138338108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-144LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-144LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143035.11e-158PREDICTED: transcription factor RAX3-like
TrEMBLA0A1S3BAJ21e-150A0A1S3BAJ2_CUCME; transcription factor RAX3-like
STRINGXP_004159573.11e-164(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-40myb domain protein 68