PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022622
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 239aa    MW: 26362.3 Da    PI: 6.3807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022622genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-111632031055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Cla022622 163 RKRRERINERLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 203
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.046153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12158213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-11162207No hitNo description
PfamPF000104.9E-8163203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MPIDERNFGS SFFSDVLIEE VDNALAAAAA AEGEDSSMER FIENNVLLGS HPPPSPVVDS  60
NGARNKPIVL KRKVNEGDIS DNQKKKSRIS SHGQKKKKTE ERRGGESVEE EGNTGGASEG  120
QSSISYSSDQ EENGSEEGNG GGFNRKSRAS RGSATDPQSL YARKRRERIN ERLRILQKLV  180
PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDEMWMFAPL AYNGIDLGLH QKLSPFLSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18397KKKSRISSHGQKKKK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444563.11e-134PREDICTED: putative transcription factor bHLH086
SwissprotQ84WK01e-52BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1S3BAK31e-133A0A1S3BAK3_CUCME; putative transcription factor bHLH086
STRINGXP_008444563.11e-134(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-39root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]