PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022601
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 290aa    MW: 31722.7 Da    PI: 9.4139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022601genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.4e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l+++v+ +G+++W++I++ ++ gR++k+c++rw + 
        Cla022601 12 KGPWSPEEDESLKRLVESYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding56.94.8e-1866108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
        Cla022601  66 PFTAEEDDAIIKAHAKFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.278762IPR017930Myb domain
SuperFamilySSF466893.41E-329105IPR009057Homeodomain-like
SMARTSM007176.3E-171160IPR001005SANT/Myb domain
PfamPF002491.2E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-261365IPR009057Homeodomain-like
CDDcd001671.82E-161456No hitNo description
SMARTSM007177.0E-1663111IPR001005SANT/Myb domain
PROSITE profilePS5129422.13964113IPR017930Myb domain
CDDcd001674.67E-1366109No hitNo description
PfamPF002492.6E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDSVGKNVDR IKGPWSPEED ESLKRLVESY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRPFTAE EDDAIIKAHA KFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSAMGDDF  120
NDPDLHQPLK RSASVGPGPV TVTSGFGLNP SSPSGSDLSD SSPSPPPPQP VYRPLARSSS  180
IVPSNHQQIV NSYDPPTSLC LSLPGSNSIS GYGSESIASP TRKMVQAIPT NGGHGKESEL  240
FSAEFLSAMQ EMIKIEVRKY MSGIEHNGWH LHTDAIRNAV VKRMGISKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-40111133105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-39711353159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-39711353159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-40111133105C-Myb DNA-Binding Domain
1msf_C5e-40111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5940300.0KC594030.1 Cucumis melo MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142878.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231603e-88MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0A0LNY00.0A0A0A0LNY0_CUCSA; Uncharacterized protein
STRINGXP_004156374.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-82myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]