PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022582
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 251aa    MW: 27463.2 Da    PI: 8.7468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022582genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08161201954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++++P       +K++ a++L +A++Y+k L
  Cla022582 161 ARLRRERISERIRILQRIVPGG-----TKMDTASMLDEAIHYLKFL 201
                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-12153209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-14156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5162201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-6175206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDMADAEHAS KWGREEMDIV SVIEQMGKFG ENLEYNEVAA SSSDFAFGSP NIGVTVTTST  60
SPPIFPSFNN LPPSTALSIS NATAPPPFPP YSAAARSRYH LPATPISGMK GEGKESESMG  120
AMREMIYRIA AMQPIEIDPE AVKPPKRRNV KISKDPQSVA ARLRRERISE RIRILQRIVP  180
GGTKMDTASM LDEAIHYLKF LKNQLHSLQI AAAAATNHPP SAAAYPFPTA IFSAGTTNYN  240
KKHHYLEDAS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-94LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-94LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650182.18e-82PREDICTED: transcription factor HEC3-like
TrEMBLA0A0A0LRA82e-81A0A0A0LRA8_CUCSA; Uncharacterized protein
STRINGXP_008444609.11e-79(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-38bHLH family protein