PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022450
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SRS
Protein Properties Length: 341aa    MW: 36842.7 Da    PI: 7.0514
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022450genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022267.3e-701092663153
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrel......kskkqsalsstklss 93 
                +g+++CqdCGnqakkdCa+ RCRtCCksrgf+C+thvkstWvpaakrrerqqq aa+++++++++     ++skr+re+      +++++sa+++ +l+s
  Cla022450 109 AGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEqfrGGENSKRQRETqtaaavTAATASASACPRLPS 208
                6899****************************************************99998888766655566666665333322223333333344444 PP

     DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 +  + le +++P+ev+s+avfrcv+vs++dd++ee+aYqtav+igGhvfkGiLydqG+e
  Cla022450 209 IT--SGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPE 266
                43..3466677***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-68111266IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.4E-27113155IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.7E-27217265IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAGFFYLGGR EGPPNKQEEE EEREQNLFLY RNEEIYNKGF EIWPQQYNNN NNHQQQQPNP  60
SLTNHLSFGV GPSRRSFMIN DPSDEPSRSA FTVMRPAAAA FAAASAATAG GMNCQDCGNQ  120
AKKDCAYLRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QIAALQQQQQ QQEQFRGGEN  180
SKRQRETQTA AAVTAATASA SACPRLPSIT SGLELAQFPS EVNSPAVFRC VKVSAMDDAD  240
EEFAYQTAVN IGGHVFKGIL YDQGPEIRYT AAGESSSGHG GDGSTHPLNL IAGPTSATTS  300
AATSTNPSAA AAAAPLLDPS IYPAPLNAFM AGTQFFPPSR S
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023546679.11e-173protein SHI RELATED SEQUENCE 1-like
SwissprotQ9FXH79e-90SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLA0A0A0LNQ51e-154A0A0A0LNQ5_CUCSA; Uncharacterized protein
STRINGXP_004173338.11e-155(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-74SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]