PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022224
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 976aa    MW: 108380 Da    PI: 5.2577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022224genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-183884148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
        Cla022224 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84
                     799****************************9.************986 PP
2Myb_DNA-binding66.74.3e-2190136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l
        Cla022224  90 KGPWSKEEDEIIVELVEKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136
                      79******************************.*************97 PP
3Myb_DNA-binding48.71.8e-15142184145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
        Cla022224 142 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0153384IPR017930Myb domain
SuperFamilySSF466897.9E-163490IPR009057Homeodomain-like
SMARTSM007172.2E-153786IPR001005SANT/Myb domain
PfamPF002498.2E-163884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-223991IPR009057Homeodomain-like
CDDcd001673.32E-144184No hitNo description
PROSITE profilePS5129433.85685140IPR017930Myb domain
SuperFamilySSF466894.49E-3287183IPR009057Homeodomain-like
SMARTSM007178.5E-2089138IPR001005SANT/Myb domain
PfamPF002493.0E-1990136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2892140IPR009057Homeodomain-like
CDDcd001671.93E-1792136No hitNo description
Gene3DG3DSA:1.10.10.605.8E-21141191IPR009057Homeodomain-like
PROSITE profilePS5129419.563141191IPR017930Myb domain
SMARTSM007172.2E-15141189IPR001005SANT/Myb domain
PfamPF002491.7E-13142185IPR001005SANT/Myb domain
CDDcd001674.38E-12144184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MESDPPLCTP LDVPGDSGQN IRALHSRRTT GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVEKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYLASGLL EQYQPLHHAV QSSVPMLSSS RVQSSIDDSS LRGAETEDIS  240
EVSQTSAIGA YSNTIPRTKE ECQLAEDAFL KEEQGSTPHC SEQYHASLDD ITFSIPEMLS  300
ELGCYVKQPP NQNFSQDCGT SSTGDNQYNL YELPNISSLE LGQELSHFQA NGSQEVENAP  360
HQTSAGLSAS TVKNMARASD KPEHMLISDY ECCRVLFSDA IINESFPSEN TTDAPDMVEL  420
NGYAHPLHRQ STSIEMPESN RNLSLQSYHH PGSDVLDNSC SQRYLAPLLV SANDDTYVYT  480
SETSHLFETL EQELVANGQD GFIYTNESAD SSPKDDFKNA ELQKQQGSKD PSKLVPVNTF  540
CSEPKTAESL PSSSGREKTH PDQPDLGGAL CYEPPRFPSL DVPFLSCDLA PAASDMQQEY  600
SPLGIRQLMM SSMNCLTPFR LWNSPTRDES PDAVLKSAAK TFTNTPSILK KRHREFLSPV  660
SDKRCDKKQE IDVGISRTSS HTNPSHQTIN SRSSEDKENI CPTEEVRLDK QSDRRNILHS  720
KYPERTSDTC LQELDNAAIT ERVDSIGQTV LVECDTNDSL LYSIPDDHCA LANCSVAIGT  780
GHGTRPPTAT CLNSESTTAP AEVTGDNASK ESSIETITIF GGTPFKRSIE SPSAWKSPWF  840
INSFLFGPRM DADVPMEEVG FFMSPGDRSY DAIGLMKEVG EHTAAACANA QEVLGNETPQ  900
SLLKGRRGKY ENQNKGKNHL TNSLQGVRST LAPDILTERR TLDFSECGTP GKGTENGKSS  960
TRSFSSPSSY LLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69381916159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69381916159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445034.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A1S3BCH50.0A0A1S3BCH5_CUCME; myb-related protein 3R-1
STRINGXP_008445034.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein