PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 216aa MW: 23685.2 Da PI: 5.3093

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022212	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	35	85	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g Cla022212 35 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 85 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.8E-13	35	85	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-21	36	94	IPR016177	DNA-binding domain
SMART	SM00380	1.0E-34	36	99	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-31	36	94	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.209	36	93	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.0E-10	37	48	IPR001471	AP2/ERF domain
CDD	cd00018	4.67E-31	37	95	No hit	No description
PRINTS	PR00367	8.0E-10	59	75	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSPSETESST TSSSSSSDSN KKPKRINNNS NSKHPVYRGV RMRNWGKWVS EIREPRKKSR 60 IWLGTFPSPE MAARAHDVAA LSIKGNSAIL NFPELVHLLP RPVSLAPRDV QAAAAKAAHM 120 HNLSSNTNLN NINTNSSSAF SDELTEIVEL PSLGTSYDGG GGEFVFVDSE LESAAWLYAP 180 PWLQSLEEEY DDDNGDCGTL GMGFLSNGFK GFLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	31	93	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125974	1e-143	AB125974.1 Cucumis melo CMe-DREB1 mRNA for DREB-like protein, complete cds.
GenBank	LN681823	1e-143	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-143	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022951619.1	2e-94	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	6e-67	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0A0LPS6	2e-89	A0A0A0LPS6_CUCSA; DREB-like protein
STRING	XP_004172022.1	4e-90	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	6e-61	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]