PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022177

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 310aa MW: 34871.3 Da PI: 4.4105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022177	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	173	216	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A+eY+k+L Cla022177 173 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYMKEL 216 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.154	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-15	171	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-10	173	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.43E-5	174	220	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-16	174	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00146	262	303	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MELDEHVFLE ELMALRRDAN WEAIPTEITD LCSNAWAFDY CFDQSTVNFP PNSSSEPLSA 60 QNLDEFYHPL ANEFSVPQMP DSAYTAMEVA AAATAPLPFQ PAHPNVEREE EEEELGFLAD 120 EIQNMETVQV ESACKMEPNQ SPEELQVFNI GTCSSLERKN RAKKLQGQPS KNLMAERRRR 180 KRLNDRLSML RSIVPKISKM DRTAILADAI EYMKELLEKI GNLQSEVEGS NPRTNSLKNT 240 KPSEFVVRNS PKFEVENRNG DTRIEICCAG KPGLVLSTVN TIEALGLEIQ QCVISCFNDF 300 ALQATCSSQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	182	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444964.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-65	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1S3BBK7	0.0	A0A1S3BBK7_CUCME; transcription factor bHLH93-like
STRING	XP_008444964.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	5e-67	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]