PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022160
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 239aa    MW: 26546.9 Da    PI: 8.8285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022160genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-155399354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L ++v ++k+L
  Cla022160 53 RSHKEAERRRRQRINSHLSTLRTLLPNT-----TKTDKASLLAEVVSHVKEL 99
               78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.925099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-125399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1453106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-1353102No hitNo description
Gene3DG3DSA:4.10.280.109.7E-1453101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.0E-4144210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLPFQSPYGF QGSWLSYRNG DHVKRSMSAA GCSIVDNAAD SSKDEKKSTE ASRSHKEAER  60
RRRQRINSHL STLRTLLPNT TKTDKASLLA EVVSHVKELR RLATEVAHRS TDQCGGGGVS  120
WPFPSEEDEA TLCYCDSENR IMRATVCCDE RSGLNRDLMQ AIRSVHVRVV RAETMTLGGR  180
TKNVVVMEWS GGGGGRGREE EFMGLRRALK AVVENQAQSV SGNKRARACC PIEDTFFMC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-165LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-165LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022997251.11e-151transcription factor bHLH30-like
TrEMBLA0A0A0LPM71e-148A0A0A0LPM7_CUCSA; Uncharacterized protein
STRINGXP_004172447.11e-149(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-33bHLH family protein