PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022152

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 521aa MW: 54752.3 Da PI: 8.3307

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022152	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.3e-08	94	138	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W++ Ed+ l avk+ G g+W+ I r + Rt+ q+ rw Cla022152 94 RKPWSEAEDLELMAAVKKCGEGNWANILRgdFLS-DRTASQLSQRW 138 789************************9822354.77777777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.627	89	146	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-14	90	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-12	91	143	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-8	93	144	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-6	94	138	IPR001005	SANT/Myb domain
CDD	cd11660	3.80E-14	95	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MESYFFQVFI SSGFPSDLNV PSSSTIEAPL TISLPRSCTD GVEFENVDPA CSIKGATITV 60 PVSVQRQPVL TPPSAEGLNT NGSTYGNNAS RRKRKPWSEA EDLELMAAVK KCGEGNWANI 120 LRGDFLSDRT ASQLSQRWAI IKKKHGTLNV GANTAGTQLS EVQLAARHAM SLALDRHVGS 180 LKAARISGSA STNTIGNVCS LTAVATSEQV QDKLHQSPTH AKPSPIGSSS LTAKAQVTTA 240 KKMIPKSSFD SDCIVRAAAV AAGARIASPA DAASLLKAAQ SKNAIHIMAK VPASTKTPTP 300 GRGPNHLEAH PSIKLPTLSN TPAVMPSLSR GGSVKITSPT TATLSSVPTD QNIAITSVMA 360 AADPLLEKEI KTTEEIRGRG LGGVQATSQK GEHCLSKQSL SGRVQEEKPA DLGPALKRQA 420 TETSNCSSSS QNMPTADGDI KVETCNQVEE RQGNNTSTVS GSSDQQGIMN QSQVERSKPQ 480 DMDIDSDGKD RPITKTDGCS ENSENKEAAS EILEGNTKVK S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MESYFFQVFI SSGFPSDLNV PSSSTIEAPL TISLPRSCTD GVEFENVDPA CSIKGATITV  60
PVSVQRQPVL TPPSAEGLNT NGSTYGNNAS RRKRKPWSEA EDLELMAAVK KCGEGNWANI  120
LRGDFLSDRT ASQLSQRWAI IKKKHGTLNV GANTAGTQLS EVQLAARHAM SLALDRHVGS  180
LKAARISGSA STNTIGNVCS LTAVATSEQV QDKLHQSPTH AKPSPIGSSS LTAKAQVTTA  240
KKMIPKSSFD SDCIVRAAAV AAGARIASPA DAASLLKAAQ SKNAIHIMAK VPASTKTPTP  300
GRGPNHLEAH PSIKLPTLSN TPAVMPSLSR GGSVKITSPT TATLSSVPTD QNIAITSVMA  360
AADPLLEKEI KTTEEIRGRG LGGVQATSQK GEHCLSKQSL SGRVQEEKPA DLGPALKRQA  420
TETSNCSSSS QNMPTADGDI KVETCNQVEE RQGNNTSTVS GSSDQQGIMN QSQVERSKPQ  480
DMDIDSDGKD RPITKTDGCS ENSENKEAAS EILEGNTKVK S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022961794.1	0.0	uncharacterized protein LOC111462453 isoform X2
TrEMBL	A0A1S3BCC8	0.0	A0A1S3BCC8_CUCME; uncharacterized protein LOC103488120
STRING	XP_008444919.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3122	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	9e-38	MYB_related family protein