PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GATA

Protein Properties

Length: 296aa MW: 31975.4 Da PI: 6.7621

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022147	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.5	1.4e-16	206	242	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Cla022147 206 CTNCGISSmaTPMMRRGPSGPRSLCNACGLFWANRGT 242 *********************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	2.1E-11	71	106	IPR010399	Tify domain
PROSITE profile	PS51320	14.217	71	106	IPR010399	Tify domain
Pfam	PF06200	1.4E-11	74	105	IPR010399	Tify domain
PROSITE profile	PS51017	12.372	138	180	IPR010402	CCT domain
Pfam	PF06203	1.9E-15	138	180	IPR010402	CCT domain
PROSITE profile	PS50114	11.002	200	259	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-12	200	250	No hit	No description
SMART	SM00401	2.7E-15	200	253	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.8E-16	204	247	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.57E-15	205	252	No hit	No description
Pfam	PF00320	3.7E-14	206	242	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	206	233	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MYARAQPLTM GDQIASVPDC GDSGEPLDNR LVRYGAHSLE DGGGVGGMIE DLNPDAVYAS 60 AGDGSDLAVQ RNDGSSQLTL SFRGQVYLFD AVSPEKVQAV LLLLGGCELS SGQQSVDLVN 120 QNQRNAVDFP GRSSQPQRAA SLNRFRQKRK ERCYDKKVRY SVRQEVALRM QRNKGQFTSS 180 KKPDGSYSHG SVSELGQDES PPETSCTNCG ISSMATPMMR RGPSGPRSLC NACGLFWANR 240 GTLRDLSKRS QDHPVTPAEQ CESDGGKDLD CRHGNHAPSN LVSFSNGDNS ALMAEH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	3e-86	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	3e-86	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022997231.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	2e-87	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1S3BBG8	0.0	A0A1S3BBG8_CUCME; GATA transcription factor 25
STRING	XP_008444911.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	7e-83	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]