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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla022146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 358aa MW: 38892 Da PI: 4.7342 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 5e-16 | 210 | 246 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Cla022146 210 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 246 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.942 | 71 | 106 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-7 | 71 | 106 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.6E-10 | 74 | 105 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 139 | 181 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.0E-14 | 139 | 180 | IPR010402 | CCT domain |
SMART | SM00401 | 4.9E-8 | 204 | 257 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.524 | 204 | 252 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.47E-11 | 205 | 254 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 208 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.15E-16 | 209 | 253 | No hit | No description |
Pfam | PF00320 | 7.0E-14 | 210 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 210 | 237 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAAANPQPLQ ARPFQEHVQV STMMGDDDGE YEDGGGGGGG GGGGGGGDVM DDVEEAHMTS 60 VSVANHGGLV MASRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP TGVPTMEVPY 120 DHNNRGMVDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YTVRKEVAQR MHRKNGQFAS 180 LKESSGASSW ESAHSCLQDG TRSETVLRKC QHCGVSENNT PAMRRGPAGP RTLCNACGLM 240 WANKGTLRDL SKGGRNVSLD HMEPETPMDV KPTIMEGEFS GIQDEHGTPE DPSKTMTEGS 300 SNPSIDPDEE DINETTGDLT NSLRMRTVNH STNDDEQEPL VELANPSDTD IDIPTNFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | DTPKRS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-101 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-101 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022131842.1 | 0.0 | GATA transcription factor 24-like | ||||
Refseq | XP_022131843.1 | 0.0 | GATA transcription factor 24-like | ||||
TrEMBL | A0A1S3BAZ6 | 0.0 | A0A1S3BAZ6_CUCME; GATA transcription factor 24-like isoform X1 | ||||
STRING | XP_008444908.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-67 | ZIM-like 1 |