PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022076

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Protein Properties

Length: 289aa MW: 31360.2 Da PI: 8.2783

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022076	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.6e-23	107	208	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+lt+sd+++ g +++p+ +a+++ + + +tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F ++s++ ++ Cla022076 107 FAKILTSSDANNGGGFSVPRYCADSIfpplnyqV-E-PPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFA--RNSSGDMF 202 89**************************9743.3.33359*********************************************..5699999 PP EEEE-S CS B3 94 vkvfrk 99 v+++r Cla022076 203 VGIRRV 208 ***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-34	102	209	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.03E-31	102	209	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.76	107	209	IPR003340	B3 DNA binding domain
CDD	cd10017	7.02E-21	107	207	No hit	No description
Pfam	PF02362	5.1E-21	107	208	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-19	107	209	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MMDPNLWRAF AGNSAHIHTV GSEVYYFVQG HVEQATYVPT LSRSVIANPT TKCIITSADY 60 SADSLSDEVC LKLNLNPIRP GESGSELVSG FGCSDEGSGK RNRIEKFAKI LTSSDANNGG 120 GFSVPRYCAD SIFPPLNYQV EPPVQTLSIT DVHGVVWNFR HIYRGTPRRH LLTTGWSKFV 180 NHKKLVAGDA VIFARNSSGD MFVGIRRVTS TRAIIGGDCS RWNIQIGGGG GRCNVEEKRS 240 GDGGNDNFSR SNIGKVPAEA VANAAELSAQ FKPFEVVYYP RAGLSEFAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-48	1	207	50	258	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269\|PubMed:12036261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445361.2	1e-176	PREDICTED: auxin response factor 17
Swissprot	Q84WU6	3e-86	ARFQ_ARATH; Auxin response factor 17
TrEMBL	A0A1S3BD99	1e-175	A0A1S3BD99_CUCME; Auxin response factor
STRING	XP_008445361.1	1e-174	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4030	30	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-83	auxin response factor 17

Publications ? help Back to Top
Shi ZH, et al. Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis. PLoS ONE, 2015. 10(3): p. e0117317 [PMID:25822980] de Lucas M, et al. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Wang B, et al. Fine regulation of ARF17 for anther development and pollen formation. BMC Plant Biol., 2017. 17(1): p. 243 [PMID:29258431] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] Lin JS, et al. MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. Front Plant Sci, 2018. 9: p. 68 [PMID:29449855]