PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021976

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 367aa MW: 41692.8 Da PI: 4.3839

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021976	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.5	2.3e-22	276	324	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +++++d+ +y +lpi +A+k+L+vc TvLK+iCR+ G++RWP+Rki+s Cla021976 276 GRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRS 324 678999*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	265	345	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-19	278	324	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAALFDEVEE DPYESSINAN ILNFANDQNP TLEDLQSTAE KPVGAAALGS GSGFENMGMV 60 ELLTHFSFGS GQYDSEAGPS NFDGEGGSTN CNLEEDEDDN MQIPSDVESK LLPIWPVTPL 120 PFLCSCCQVL REFLHTNGVN SRKLEIHGRL GMICHAILEH KPIVNVDNIS PQYQMFDFCE 180 KSCEEIKQFL LQYCLKQILE DYNMIPDPMS NFYDALCVGI DWFENLNTDG FFQLSPDNSE 240 DDDMEQSIPE LQNESREQAE QPPKRPSLAA QRQRTGRMTV NDVWEYLHLP ISEASKKLNV 300 CNTVLKKICR RSGLSRWPYR KIRSYERRIA ALRATMNSSY GDTRIRAEAE IERVQKELAD 360 FCARIRI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAALFDEVEE DPYESSINAN ILNFANDQNP TLEDLQSTAE KPVGAAALGS GSGFENMGMV  60
ELLTHFSFGS GQYDSEAGPS NFDGEGGSTN CNLEEDEDDN MQIPSDVESK LLPIWPVTPL  120
PFLCSCCQVL REFLHTNGVN SRKLEIHGRL GMICHAILEH KPIVNVDNIS PQYQMFDFCE  180
KSCEEIKQFL LQYCLKQILE DYNMIPDPMS NFYDALCVGI DWFENLNTDG FFQLSPDNSE  240
DDDMEQSIPE LQNESREQAE QPPKRPSLAA QRQRTGRMTV NDVWEYLHLP ISEASKKLNV  300
CNTVLKKICR RSGLSRWPYR KIRSYERRIA ALRATMNSSY GDTRIRAEAE IERVQKELAD  360
FCARIRI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-85	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-85	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023537902.1	0.0	uncharacterized protein LOC111798799
TrEMBL	A0A1S3BCG6	0.0	A0A1S3BCG6_CUCME; protein RKD2-like isoform X1
STRING	XP_008445526.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	8e-13	RWP-RK domain-containing protein