PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021917

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 336aa MW: 38122.7 Da PI: 6.8323

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021917	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.3	9e-51	36	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppG+rFhPtdeel+ +yL+ kv + ++ + v i evd++++ePw+Lp+++k +e+ewyfFs r +ky+tg r+nrat +gyWkatgkd++++s+ +g Cla021917 36 LPPGYRFHPTDEELIAFYLASKVFKPSNFHHGVnIVEVDLNRCEPWELPEEAKMGEREWYFFSLRVRKYPTGLRTNRATMAGYWKATGKDRQIHSScNGV 135 79******************999885444666***********99999*************************************98999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 + g+kktLvfykg ap+g+kt+Wvmheyrl Cla021917 136 KLGTKKTLVFYKGGAPRGVKTKWVMHEYRL 165 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-60	35	188	IPR003441	NAC domain
PROSITE profile	PS51005	55.624	36	188	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	37	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MFGIEEVIGE LNREEEEEEE GDNGKEIIKN NKHRLLPPGY RFHPTDEELI AFYLASKVFK 60 PSNFHHGVNI VEVDLNRCEP WELPEEAKMG EREWYFFSLR VRKYPTGLRT NRATMAGYWK 120 ATGKDRQIHS SCNGVKLGTK KTLVFYKGGA PRGVKTKWVM HEYRLHSDLA SPNVCKQDEW 180 VLCRIIHKSG EKLKPRSLQE AIPSPISLPP LSLDTPQTIH RNNIRFQTAL HNNNNNNIHR 240 HENSLESFII NNPHFIFQSN LFPFGLNNHL DDTPPSIQAT DTNYHAHFNP SLLLEGSCDS 300 RQASSFGVDS GGTLVDVAAY GGGRGDQSDE NWSGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-48	36	194	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-48	36	194	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-48	36	194	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-48	36	194	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-48	36	194	20	174	NAC domain-containing protein 19
3swm_B	7e-48	36	194	20	174	NAC domain-containing protein 19
3swm_C	7e-48	36	194	20	174	NAC domain-containing protein 19
3swm_D	7e-48	36	194	20	174	NAC domain-containing protein 19
3swp_A	7e-48	36	194	20	174	NAC domain-containing protein 19
3swp_B	7e-48	36	194	20	174	NAC domain-containing protein 19
3swp_C	7e-48	36	194	20	174	NAC domain-containing protein 19
3swp_D	7e-48	36	194	20	174	NAC domain-containing protein 19
4dul_A	7e-48	36	194	17	171	NAC domain-containing protein 19
4dul_B	7e-48	36	194	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681822	1e-122	LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBank	LN713257	1e-122	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008464816.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X1
Swissprot	Q9S851	8e-77	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A1S3CMC2	0.0	A0A1S3CMC2_CUCME; protein CUP-SHAPED COTYLEDON 3 isoform X1
STRING	XP_008464816.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24850	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-76	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]