PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021901
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 298aa    MW: 32594.2 Da    PI: 7.3258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021901genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10181228455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cla021901 181 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 228
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-18175245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-10175232No hitNo description
Gene3DG3DSA:4.10.280.106.3E-18177245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPPTLINEG SFPSNPNANA NITPFNLSEI WHFPINGGTS VEEPAPSLAL RMAHLAQNLG  60
HFGEIAMGNP EVSPTDPVTL QLQQRLAHGH GVSKKRRDAE QDSPKVSSTS NGNNANGNSG  120
AANDSGGKRL KTAACRDDNH ESKTEAEPRS GKAEQNSQPP PEQPKQDYIH VRARRGQATD  180
SHSLAERARR EKISERMKIL QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA  240
VNSRIGPGIE VFPPKDYGQQ TFETTGVAFG SQATREYSRG SSPEWLHMQI GGGFERTR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818221e-100LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBankLN7132571e-100LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464787.10.0PREDICTED: transcription factor bHLH79
SwissprotQ69WS39e-78BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1S3CNW10.0A0A1S3CNW1_CUCME; transcription factor bHLH79
STRINGXP_008464787.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-97BIG PETAL P