PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021863
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 547aa    MW: 59448.2 Da    PI: 7.6377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021863genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08364411455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cla021863 364 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 411
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.11E-10358415No hitNo description
SuperFamilySSF474597.46E-17358430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16360428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5364411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEKEFFMNDA GCSFYGMEIQ PNELNSSGLF NPNWENSMDQ SDLFESTLSS IVSSPANSHV  60
IGGGGGGGDN LMMRELIGRL GSICNSGEIS PHSYIGGTNN NSTNTSCYNT PLNSPPKLNL  120
SSIMESQIRG NLIPHHQNLA PFSADPGFAE RAARFSCFGN RNLGGLNGQL GSNETQELSN  180
RSIAGAGVES GKLSRVSSNK SFNIGGIGSQ TGVQEGEQQS PVQKVNSMPI PNKKVLNRFS  240
RSSTPENAGD SREGSSVSEQ ITIGELGLKG KAETNTRKRK SVQTGQAKDV KAAVENHESN  300
GKKIKPDEVT KKEIDAAKGK SEAKDGTKAS GDPNQKQNND NSKPPEPPKD YIHVRARRGQ  360
ATDSHSLAER VRREKISKRM KFLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK  420
LATVNPRMDF NMETLVPKDI FKGPGSSPHT GYPMDSSVPQ FAYDYQSMHM PPLHSSISNG  480
TEKQFSVASA SGVMQRNLSG QMPSGYNEVV NGIQISKFWE DELHTVVQMG YGQNQLQNAN  540
DEMKSEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280TRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147655.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0A0L6390.0A0A0A0L639_CUCSA; Uncharacterized protein
STRINGXP_004169691.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-63bHLH family protein