PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021810
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 310aa    MW: 33926.6 Da    PI: 5.4302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021810genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-182572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
        Cla021810 25 RGPWTVEEDITLINYIANHGDGRWNSLARCAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding49.41e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
        Cla021810  78 RGNITLEEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1282072IPR017930Myb domain
SuperFamilySSF466892.95E-3023119IPR009057Homeodomain-like
SMARTSM007171.1E-142474IPR001005SANT/Myb domain
PfamPF002491.4E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-232679IPR009057Homeodomain-like
CDDcd001676.51E-122772No hitNo description
PROSITE profilePS5129422.74673127IPR017930Myb domain
SMARTSM007178.3E-1477125IPR001005SANT/Myb domain
PfamPF002492.1E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2280126IPR009057Homeodomain-like
CDDcd001676.34E-798121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDGNKERRFD SGTLQGGDDD GDLRRGPWTV EEDITLINYI ANHGDGRWNS LARCAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQQLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DTMRYLWMPR LVERIQAAAV SSAASAAVDG SRSYGSVTPT  180
PAAVMMNGGS DFVSTPQVTP SYASENSSSG GGGGSSDGTQ VSSVSELTDC YDNFGCFPVG  240
YGQESAAAAA APLQSPAPGF FNEGTLDFQA MEQSTCQWLA ADGGVDTSES LWNAAGAGAD  300
YLWFLQQQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252211924120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651090.10.0PREDICTED: transcription factor MYB108
SwissprotQ9FGY34e-90MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0A0L5Y40.0A0A0A0L5Y4_CUCSA; Uncharacterized protein
STRINGXP_008438973.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-79myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]