PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021601
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family CPP
Protein Properties Length: 788aa    MW: 85633.8 Da    PI: 5.5001
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021601genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.4e-16491529240
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Cla021601 491 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 529
                689**********************************96 PP
2TCR50.54e-16576614139
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Cla021601 576 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 614
                589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18490531IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.095491616IPR005172CRC domain
PfamPF036381.1E-11493528IPR005172CRC domain
SMARTSM011144.4E-17576617IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11578614IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MDTPERNQIG TTSVSKFEDS PVFNYINNLS PIQPVKSIHT TQTFNSLSFA SLPSVFTSPH  60
ASSYKESRFL RRHIYSDLSK PDFSSENENK VGTDGGNTGN VAQLQDNSSA PDGKSDSLSN  120
PSTEPPSEHS VSTKEEPQAS KSDSSHSDCN QKLPDSVLKS GEDPSLSDPC VKNKSEDGSS  180
QAEGNKEVVS HTEEREGTGY DWESLITEGA DLLIFSSPNG SEAIRLVQKP LDLVTGFTSS  240
TLSQIMDNDN ANLSKMRIAD PIESSGGQHE IEFLSSEAGE ACEIKDMDQG VDNLSFPNSS  300
NSISREITDD EVARYIADDC KPASNLYRGM RRRCLDFEAA VSRRKNLEDG SNGGSVLTHP  360
EEKTASMDKQ LVPYKSGGVA TRCVLTGIGL HLNALATTSK DAKNLNHEKF SSERQLNLPN  420
SSASCHSPST GRDPLLTSVV TERDMDPSGN GIQNEEDAAR ASAYVLAEDF NQNTKWFCRR  480
RLEHAGETES SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCQDCFNKPI HEDTVLATRK  540
QIESRNPLAF APKVIRNSDS LPEPGDESNK TPASARHKRG CNCKKSSCLK KYCECYQGGV  600
GCSISCRCEG CKNAFGRKDG SSLLGLDAEL EEEEAETNQK SVMDKGLQGP EIQNNEEQNP  660
GSAIPSTPLQ LSRQLVSLPF SSRSKPLRSS FLNVGSSSGF YAAHKLEKPN ILRAQPDLGK  720
NTKPVSEDEM PDILRGDCSP GAGVKTGSPN SKRISPPQSD FGLSPLPRTG RKLILQSIPS  780
FPSLTPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1749361312120Protein lin-54 homolog
5fd3_B5e-1749361312120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438631.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A1S3AXI70.0A0A1S3AXI7_CUCME; protein tesmin/TSO1-like CXC 2
STRINGXP_008438631.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-134TESMIN/TSO1-like CXC 2