PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021592
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 356aa    MW: 41603.1 Da    PI: 5.2122
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021592genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36401322103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+yei+ed  +++++sws+ +nsfvv+d+++f+ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll+ i+
     Cla021592  40 FLTKTYEIIEDTGTNHIVSWSRGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFAHEGFLRGQKHLLKLIR 127
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Cla021592 128 RRKTA 132
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3933123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5936129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.28E-3436129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-184063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNRPRRVKEE VPASSSSAPP PTTASPQPME GLHEAGPPPF LTKTYEIIED TGTNHIVSWS  60
RGNNSFVVWD PQSFSLTLLP KYFKHSNFSS FVRQLNTYGF RKVDPDKWEF AHEGFLRGQK  120
HLLKLIRRRK TAQPNASQQP LDPCVEVGRF GLDGEVDRLQ RDKQVLMAEV VKLRQQQQNT  180
KTYLQTMERR LKRTETRQQL MMNFLARAIQ NPDFIQQLIH QKDKHKELEE AINRKRRRHI  240
DQGQADFEEE ETQDHLPPFG NDDIQMDVDL LAVDEQHQMN YHVPKEETMD DSCERDGIDN  300
DDLNEGFWEN LLNEANEDHY GFGTHGFEEQ EDFKDEDHGN NELVDHFAFF SSNNLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-243513212123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-139LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-139LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134433.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0A0L5E20.0A0A0A0L5E2_CUCSA; Uncharacterized protein
STRINGXP_004169331.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B