PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021526
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 150aa    MW: 16665.7 Da    PI: 9.9254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021526genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-201970256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr+++ +g+++AeIrdps+ng  +r +lg++ taeeAa+a+++++  l+g+
  Cla021526 19 KYRGVRRRP-WGKYAAEIRDPSKNG--ARQWLGTYETAEEAARAYDRMAFHLKGH 70
               8********.***********9998..***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-221978IPR016177DNA-binding domain
SMARTSM003809.5E-331983IPR001471AP2/ERF domain
CDDcd000182.11E-281977No hitNo description
PfamPF008471.1E-131970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-301978IPR001471AP2/ERF domain
PROSITE profilePS5103223.4331977IPR001471AP2/ERF domain
PRINTSPR003679.7E-112031IPR001471AP2/ERF domain
PRINTSPR003679.7E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEDSRKGKEQ QKQGDDGIKY RGVRRRPWGK YAAEIRDPSK NGARQWLGTY ETAEEAARAY  60
DRMAFHLKGH LASLNFPSEY YARVMGSPPH PPHLFPSAPI NRGFESGVGG GGSSSSNASP  120
QQVIVFECVD GKVLEDLLAQ EDKKKKKNSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-261777363ATERF1
3gcc_A1e-261777363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-139LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-139LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022924699.12e-88ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3AX973e-81A0A1S3AX97_CUCME; ethylene-responsive transcription factor ERF098-like
STRINGXP_008438535.15e-82(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]