PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla021334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16797.6 Da PI: 9.5123 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 34 | 124 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 l++s+v ++lvlp kf ++ ++ t+ +g++W++ + y +++g+ + tk W++Fv++n+Lk+gD +vF+l+ + s +++v+++r Cla021334 34 LSKSHVAPICNLVLPAKFH-SIlpAIV--I---PTVLFCRGKKWKIDY-YGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMeCSsSILKFRVQILR 124 678999999*********8.5544333..3...3566688********.8888888999**********************88555566666777665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-15 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-17 | 27 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.603 | 30 | 126 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.31E-16 | 33 | 124 | No hit | No description |
Pfam | PF02362 | 2.8E-13 | 34 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0011 | 34 | 126 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MQSQREPPTE LPTMEPQNGE NLPLSGKPYH AFILSKSHVA PICNLVLPAK FHSILPAIVI 60 PTVLFCRGKK WKIDYYGNRR GKALDTKQWR KFVNDNRLKS GDACVFELME CSSSILKFRV 120 QILRGDIPLQ LHDKFSGETK DTPIYLE |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-104 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-104 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650806.1 | 5e-94 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A0A0L3V3 | 1e-92 | A0A0A0L3V3_CUCSA; Uncharacterized protein | ||||
STRING | EMJ22139 | 1e-43 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-10 | B3 family protein |