PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021275
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 581aa    MW: 67355.1 Da    PI: 6.9782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021275genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07375415346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE el  + + ++G++ Wk  a+ +g  + + ++k+ w+ 
        Cla021275 375 KWTPEEYELVRKFHDKHGSD-WKVLAEVLG--KHRVHVKDTWRR 415
                      8*******************.********8..788999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501819.63144IPR001810F-box domain
SuperFamilySSF813836.8E-12261IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.1E-7244No hitNo description
PfamPF129373.7E-6243IPR001810F-box domain
SMARTSM002561.1E-4444IPR001810F-box domain
SMARTSM007170.0023299370IPR001005SANT/Myb domain
SMARTSM007170.014372419IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-9374434IPR009057Homeodomain-like
PROSITE profilePS500906.609375417IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-10375427IPR009057Homeodomain-like
PfamPF139213.0E-11376434No hitNo description
PROSITE profilePS500907.735418486IPR017877Myb-like domain
SMARTSM007171.1422488IPR001005SANT/Myb domain
SuperFamilySSF466894.39E-5423542IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-7428487IPR009057Homeodomain-like
PROSITE profilePS500907.201488541IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MENLPVECIS HILGFTSPKD VCRSAGVSSA FRSAADFELL WKTFLPEDYR NTIAMSSSLP  60
PPYLNSLSAK ALYFLLSDHP LFIKVENSMT TSELIAQDEE VTHTKMQMQT MKNTKEPDGS  120
DKNDEEKKKK KKKKKKQKEH KIQEDEQKEE IESDTEHRVK NEEIESEAEP CVKKDDEMQK  180
KKKAKLPEGI DENNCKSGPD SGREKKKKKQ NTEDSKESSR HITKEKKRKK TKSVEDGSLE  240
KVREGGAGSR EHEEISSPPE RLSPKRSSKK VKFSEDVEIF PLVDVESSGK TKQDDGLIRG  300
KRFSKEEDEI VKMAVLQYIE EHALGDEGLK KVLHCKEFPE VKNCWKDIGK AIPYRPYLSV  360
YYRAHILFER DETRKWTPEE YELVRKFHDK HGSDWKVLAE VLGKHRVHVK DTWRRIKLPN  420
MKKGQWTQDE YQKLFDLVNK DLRLKAYEEK RSKHGMLRDN ICWGAISDKL STRSTALCCQ  480
KWYGQLTSPM VAEDEWADVD DYRLIDALSS LDACSIEDVE WDQLLEHRSG DVCRKRWSQM  540
VKHIGDNGNK SFSEQVEVLS ERYSIDVLDA REAYDNAPIV D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126135KKKKKKKKKK
2127135KKKKKKKKK
3129135KKKKKKK
4201209GREKKKKKQ
5206228KKKQNTEDSKESSRHITKEKKRK
6225229KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438110.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A1S3AVK40.0A0A1S3AVK4_CUCME; RNA polymerase I termination factor
STRINGXP_008438110.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-131MYB_related family protein