PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 618aa MW: 68589.1 Da PI: 6.1003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.1e-13 | 447 | 493 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Cla021148 447 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 493 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.4E-55 | 52 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.047 | 443 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-14 | 446 | 497 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-18 | 446 | 504 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 447 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-18 | 447 | 504 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-17 | 449 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MKIEDGLRSV GGKDEDKTVV AAVLGTRAFN YLMACSVSNE NLFMAVRNDE NLQNKLSDLV 60 ERPNASNFSW NYAIFWQLSH SKSGEWVLGW GDGSCRDPRD GEETDSTQIL SLRLEDESQQ 120 RMKKRALQKL HTLFGGSDED NYALGLDRLT DTEMFFLASM YFSFPRGEGG PGKCLASGKH 180 TWLSDVLNLP SEYCVRSYLA KSAGIRTIVL VPTDVGVVEL GSVRSVNESL ELVQLIRSLF 240 SSQLSLDRVR SSAAMSMMAE RKDESTPFAS LGIAERGEGG GGIPKVFGQT LNSGNMGRSH 300 FREKLAIRKM DERSWEACAN GGRIQFQSPR NGIRSPNLAH VHGLKQGNPA EIYGSPTPPV 360 NNNHEQQLVN GVRDEFCLNP YQSQKLAQMQ IDFSAATSRP SVINRVIADT EHSDVEPQCK 420 EEGPGTDERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS 480 LLGDAIAYIN ELQEKVKAME FEREKSGLTS SDATPSEGNP EIENKEQFLD VDIEVEAAHD 540 EVIVKVSCPL ESHPVSRVIK AMKDAQINVV DSKLSEANDK VLHTFVIKSP GSEQLTKEQF 600 IAAFSRDSTS LHPLSTVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-29 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 428 | 436 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437879.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13 | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A1S3AV62 | 0.0 | A0A1S3AV62_CUCME; LOW QUALITY PROTEIN: transcription factor bHLH13 | ||||
STRING | XP_008437879.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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