PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021095
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SBP
Protein Properties Length: 369aa    MW: 40975.7 Da    PI: 7.4877
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021095genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.1e-41131208178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +CqvegC++ l +ak+yhrrh+vCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Cla021095 131 RCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVVGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSH 208
                6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-35126193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.667129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-38130210IPR004333Transcription factor, SBP-box
PfamPF031106.2E-32132205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEMQICGNLM GHSNNIPTRD HNPNNAPNIS WANTNIWELN SEPISSSAHP LWLQPHDADH  60
RQFLYAGDHH QPAHFHPDPH LMCLKLGKRH YFEDANAPSV VGGFTAVGKR GKALYGGDGG  120
GYGGVPSSVP RCQVEGCHVA LVNAKDYHRR HRVCEMHSKA PKVVVVGLEQ RFCQQCSRFH  180
VISEFDDSKR SCRRRLAGHN ERRRKSSHES VAARNCTQEN KSMTGGIAYI PSPTGRALSL  240
LSSKNESWAT SSELSLRSSA ALRELIAENR AAILARQLIL DRDWHSNHTA AGADDFGGGG  300
VGFHQQQGLY CEQQQLSWER MNGSHVTLDL MQAPSTAFGL LSVRGKSKEE DEECCELWNS  360
FNDQDSHVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29126205584squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-123LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-123LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022924306.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A1S3AUU71e-176A0A1S3AUU7_CUCME; squamosa promoter-binding-like protein 7 isoform X2
STRINGXP_008437791.11e-175(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-37squamosa promoter binding protein-like 2