PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021090
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 538aa    MW: 60132.4 Da    PI: 6.4822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021090genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001109126219
                EETTTTEEESSHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                +C++Cgk F ++ ++  H
  Cla021090 109 VCENCGKEFVSWKSFLEH 126
                6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-41537IPR007087Zinc finger, C2H2
SMARTSM003552.91537IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SMARTSM00355250108128IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.7E-6297320No hitNo description
PROSITE profilePS5015710.076298325IPR007087Zinc finger, C2H2
PfamPF139121.9E-9298322IPR007087Zinc finger, C2H2
SMARTSM003550.13298320IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-6375402No hitNo description
PfamPF139126.9E-12379403IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182380402IPR007087Zinc finger, C2H2
SMARTSM003551380402IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAALILDHQK PNLKHFCKIC KKGFGCGRAL GGHMRAHGIV ADDSPTPSNI LDDDDPDPDP  60
DPHNPHPHHH HHHHHHHHPH SWDHHHNKPI NRRMYALRTN PNRLKTCRVC ENCGKEFVSW  120
KSFLEHGKCT TSDDLDDSLL SSPPCSDDDD DDEDEDECTA TPRRPSGSNN NNWSKRKRSL  180
RVKVGSPASN EEEDLANCLM MLSNGRVVEP MLVEGEAEAE AEAEAEESCA SASKDDHHLL  240
LQQQQDHNHH RNYNYNNNNN IRKPINFIPP LSYRLPDTEE DNNNNKPKGT VGGGKGMFEC  300
KACKKVFNSH QALGGHRASH KKVKGCFAAR LDHMDLDARE NDDVYEDSLF PTKPNHNSSS  360
SAFHYENPMG SASKRKTKVH ECSICHRIFS SGQALGGHKR CHWITSNAAA AAAAAAAGAP  420
KLDLNLPAPA DEVRRPAFEV STEIHLQSWV CKNDKVEENE CEEEEQKQGK ENKTMMKKEE  480
ENKNSNIVNN EDVEEEAESK VKLAKLSELK DMNMSAGNSS PWLQVGIAST THVVTPDP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437784.10.0PREDICTED: uncharacterized protein LOC103483116
TrEMBLA0A1S3AVE60.0A0A1S3AVE6_CUCME; uncharacterized protein LOC103483116
STRINGXP_008437784.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-22C2H2-like zinc finger protein