PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021089
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 376aa    MW: 42504.6 Da    PI: 5.4843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021089genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC+ C +sFs+   L  H+r+H
  Cla021089  4 HKCKLCFRSFSNGRALGGHMRSH 26
               79********************9 PP
2zf-C2H213.50.00021241263123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k+F++   L  H  +H
  Cla021089 241 YKCETCNKVFRSYQALGGHRASH 263
                9***********99999998887 PP
3zf-C2H211.40.001300322123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C ++Fs+   L  H r+H
  Cla021089 300 HECPVCFRVFSSGQALGGHKRSH 322
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.6E-8326No hitNo description
PfamPF139121.6E-6327IPR007087Zinc finger, C2H2
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-8236263No hitNo description
PfamPF139127.2E-12241265IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429241268IPR007087Zinc finger, C2H2
SMARTSM003550.012241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
SuperFamilySSF576676.37E-5297324No hitNo description
PfamPF139124.9E-11300322IPR007087Zinc finger, C2H2
SMARTSM003550.19300322IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349300327IPR007087Zinc finger, C2H2
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDRHKCKLCF RSFSNGRALG GHMRSHMMNL PVPAKGEEAA VAAAHGQLSE EGDSASFLSS  60
PSSSEGDAEE KGVSYGLREN PKRSIRVVDP EFSFAVDAGS VVLQDRESET ESSKNPTRRR  120
SKRTRKPDRH HQQQLHHHYN VFKRLQEKKV GQPESWTEAE PVSSISGSTT EEDVAFWLMM  180
LSRDKWTKRQ GGYEEEDEEE EEEEDEEDEE EEEEEELEES MEETDDSEAV KFPKNRNRGN  240
YKCETCNKVF RSYQALGGHR ASHKKIKVSA SYNNPHSQLG RQHENAAATT SGSMAERKIH  300
ECPVCFRVFS SGQALGGHKR SHVTAYSIPP KTPQKKLSDS LIDLNLPAPF EEDDLSQIEL  360
SAVSDADFVN PIRHRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650633.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLA0A0A0L5N50.0A0A0A0L5N5_CUCSA; Uncharacterized protein
STRINGXP_008437783.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-52C2H2-like zinc finger protein