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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 41971.7 Da PI: 6.8616 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.8e-13 | 168 | 219 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +++l+P++ + ++ + a+i A++++k+L+ Cla021059 168 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YIQRGDQASIIGGAIDFVKELE 219 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-15 | 158 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-13 | 166 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.62E-10 | 166 | 216 | No hit | No description |
PROSITE profile | PS50888 | 14.989 | 167 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 168 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-9 | 173 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MNMLCFLLHF SSHSGFYSFQ FYGEYSETGC SEQEFTSLGF EESEEVCFLT SSLEDRIPFL 60 QMLQSVESQS FKDKEPNFQS LLKLQHLNKP WEEGVSKIQE LVELFSSPIN SETKDQKRPP 120 NSEGMSSESN RNQGLCRTQM EKAPPVTKER RKRKRSKPTK NKEEVESQRM THIAVERNRR 180 RQMNDHLNVI KSLIPTSYIQ RGDQASIIGG AIDFVKELEQ LLESLEALRK ERKGTESGCK 240 GEQLEVGVAS NGRIGEGVCA ELKSEVAEIE VTMIQTHVNL KIKCPKRQGL LLKAIVALED 300 LRLTVLHLNI TTSQATATML YSFNLKIEDE CKLGSAEQIA ATVNQIFSFI NDGRLVNEAK 360 ANFRQYSGSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | RRKRKR |
2 | 150 | 157 | RKRKRSKP |
3 | 168 | 179 | RMTHIAVERNRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134273.1 | 0.0 | PREDICTED: transcription factor bHLH67 | ||||
Swissprot | O81037 | 2e-81 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | A0A0A0L6W2 | 0.0 | A0A0A0L6W2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004134273.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-77 | bHLH family protein |
Publications ? help Back to Top | |||
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