PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020901
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 275aa    MW: 30904.8 Da    PI: 8.4703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020901genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
        Cla020901 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding383.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        Cla020901  69 GDFSEEEDRIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.467962IPR017930Myb domain
SuperFamilySSF466893.19E-2711109IPR009057Homeodomain-like
SMARTSM007175.4E-131364IPR001005SANT/Myb domain
PfamPF002494.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-251569IPR009057Homeodomain-like
CDDcd001673.42E-101662No hitNo description
PROSITE profilePS5129422.66263117IPR017930Myb domain
SMARTSM007171.9E-1167115IPR001005SANT/Myb domain
PfamPF002496.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2470117IPR009057Homeodomain-like
CDDcd001673.70E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSEEEDRIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
HHEKQQQQLV RRGRKIKSEI GNSMAIVFDN QVINNNNNNQ SSFLPELSPA APPYVNYQPL  180
QFPSNSQQLF GHTAGVNHEL SRTDTIQFGL DGASNQPITS CHVGELEKVV YSNTPSFDDG  240
LQFSCDNNGL NLINDLDWGE MSSLISAPLY PSTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818614e-85LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132614e-85LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141414.11e-171PREDICTED: transcription factor RAX1-like
SwissprotQ9FKL23e-79MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1S3BTV11e-169A0A1S3BTV1_CUCME; transcription factor MYB36-like
STRINGXP_004172257.11e-171(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-81myb domain protein 84
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]