PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020795
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 165aa    MW: 19282.6 Da    PI: 6.8004
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020795genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.82e-123795563
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               ++ +r+q+NRe+ArrsR RK++ ++ L   v +L     +++++++  +++  + ++e+
  Cla020795 37 RKRKRMQSNRESARRSRMRKQQHLDGLMAQVSQLRDNKNQMISRINLTTQLFLNIEAEN 95
               6789******************************99999*******9999887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-163397IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-93483No hitNo description
PROSITE profilePS502179.8183598IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.8E-113788No hitNo description
PfamPF001703.9E-93783IPR004827Basic-leucine zipper domain
CDDcd147027.09E-163888No hitNo description
PROSITE patternPS0003604055IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MIMDCSSGNS SGSLSQIVLQ NQSSGSEEEL RQLMDQRKRK RMQSNRESAR RSRMRKQQHL  60
DGLMAQVSQL RDNKNQMISR INLTTQLFLN IEAENSVLRA QILELTHRLE SLNQILSHIN  120
DNDDEEQHNF LQNFDDFDHN PLFINSFFIT QQPIVASAHH HLLHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14956RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-132LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-132LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022975866.13e-96bZIP transcription factor 11-like
SwissprotC0Z2L52e-38BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1S4E5Q85e-88A0A1S4E5Q8_CUCME; bZIP transcription factor 53-like
STRINGXP_008466523.19e-89(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2483133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-39basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]