PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020765
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 87aa    MW: 9983.11 Da    PI: 8.4812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020765genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+   + + +a + + ++   +W+  ar +g g+t +++k ++  
        Cla020765  6 NWTAKQNKVFENALAIYDKDtpeRWHNLARAVG-GKTVEEVKRHYER 51
                     8********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.746257IPR017884SANT domain
SMARTSM007174.5E-7355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-5559IPR009057Homeodomain-like
CDDcd001672.25E-6653No hitNo description
SuperFamilySSF466894.93E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGSGSNWTAK QNKVFENALA IYDKDTPERW HNLARAVGGK TVEEVKRHYE RLVEDVNKIE  60
TGQVPFPNYR RSGPAGRGFC FVDEEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-32273677RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6830916e-94LN683091.1 Cucumis melo genomic scaffold, unanchored_scaffold01279.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465612.12e-58PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3CPA04e-57A0A1S3CPA0_CUCME; protein RADIALIS-like 3
STRINGXP_008465612.17e-58(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]