PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020647

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 417aa MW: 47842 Da PI: 7.6203

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020647	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	160	183	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H Cla020647 160 YVCGVCGRKCKTNLDLKKHFKQlH 183 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.1E-6	81	150	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.679	160	188	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	183	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.60E-12	172	314	No hit	No description
Gene3D	G3DSA:3.40.50.1010	1.1E-6	245	310	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MNNRNFVCNP MVALPLLPSS HLLFSNSAID FRHRVSIVVK PTFQGSCRWR IRATAENGAS 60 SASTSQIDMM RNREGVFTAK QSKVVVLWDL DNKPPRGPPY EAAMGLKRVA QRFGQVVDMS 120 AYANRHAFIH LPQWVVEERR ERRQLDILER KGLFTPSESY VCGVCGRKCK TNLDLKKHFK 180 QLHERERQKK LNRMRSLKGK KRQRYKERFV SGNHKYNEAA RSLITPKVGY GLASELRRAG 240 VFVKTVEDKP QAADWALKRQ MQHSMSRGID WMILVSDDSD FSEMLRKAKE ANLGTVVVGD 300 RDRALGRHAD LWVPWMGVEN GDITEEDLVP KRWRMRRRDE EMDGNDDGFS VSRFYGDTEA 360 GDLESVVEEL VSASTEEFNG FRISAFSEGE DEEDDWVEED VGSDYLLVMS DEEDGHS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MNNRNFVCNP MVALPLLPSS HLLFSNSAID FRHRVSIVVK PTFQGSCRWR IRATAENGAS  60
SASTSQIDMM RNREGVFTAK QSKVVVLWDL DNKPPRGPPY EAAMGLKRVA QRFGQVVDMS  120
AYANRHAFIH LPQWVVEERR ERRQLDILER KGLFTPSESY VCGVCGRKCK TNLDLKKHFK  180
QLHERERQKK LNRMRSLKGK KRQRYKERFV SGNHKYNEAA RSLITPKVGY GLASELRRAG  240
VFVKTVEDKP QAADWALKRQ MQHSMSRGID WMILVSDDSD FSEMLRKAKE ANLGTVVVGD  300
RDRALGRHAD LWVPWMGVEN GDITEEDLVP KRWRMRRRDE EMDGNDDGFS VSRFYGDTEA  360
GDLESVVEEL VSASTEEFNG FRISAFSEGE DEEDDWVEED VGSDYLLVMS DEEDGHS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452587.1	0.0	PREDICTED: uncharacterized protein LOC103493568
TrEMBL	A0A1S3BU78	0.0	A0A1S3BU78_CUCME; uncharacterized protein LOC103493568
STRING	XP_008452587.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-162	C2H2-like zinc finger protein