PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020607
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 336aa    MW: 37430.5 Da    PI: 5.2574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020607genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-102623021055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Cla020607 262 RKRRERINERLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 302
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-14251318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-12257312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-12261306No hitNo description
PfamPF000108.2E-8262302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDSFGGFNGE GEWDLCSSIL SLEDLDFTPI NLPQPTSGFM ADAWFCSLDS ITANLPSCHV  60
GNAIDQFPFI AAASDQHHHH HVSMSIEENK MESIFSASTT DILLQEITGF SSEDKFLDMD  120
AQTHLGDDDH NNATNSANAL FHHKRKSIVV DDDHNKLINP NKKIRNPNNV QKSRKGRESS  180
GKSNSSSKEK VMSSTRRRKC EEEEEQENGG SCDMNSCTSD NSSEDDNASQ DTNGGGSVLE  240
PPKPKTRATR GSATDPQSLY ARKRRERINE RLRILQKLVP NGTKVDISTM LEEAVHYVKF  300
LQLQIKLLSS DELWMYAPIA YNGMDIGLQQ KLSSFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022937063.11e-158transcription factor bHLH139-like
TrEMBLA0A0A0L5331e-138A0A0A0L533_CUCSA; Uncharacterized protein
STRINGXP_004164586.11e-138(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-40ROOT HAIR DEFECTIVE 6-LIKE 2