PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020576

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 1661aa MW: 181178 Da PI: 6.3012

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020576	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.7e-09	990	1031	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE ++ +av +G++ ++ I+r++ +++ qck ++ Cla020576 990 SNWTDEEKSIFMQAVSSYGKD-FDMISRCIR-SKSRDQCKVFFS 1031 58***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-12	758	820	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.764	770	821	IPR017884	SANT domain
SMART	SM00717	3.1E-5	771	819	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-5	984	1032	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-10	986	1038	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.648	987	1038	IPR017884	SANT domain
SMART	SM00717	4.1E-7	988	1036	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-6	991	1031	IPR001005	SANT/Myb domain
CDD	cd00167	3.85E-6	991	1030	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1661 aa Download sequence Send to blast
MPPEPLPWDR KDLFKERKHE KSEAIGSAAR WRDSYHGSRE FNRWGSADFR RPTGHGKQGS 60 WHQFSEESSH GYGPSRSFSD RVLEDESFRP SVPRGDGRYI RIGREIRGSF SHRDWRSHSR 120 ETNNGFGNPS RRPSSASQDV SSDQRSVDDT VTYSSPQSVH GLENGPRSDV EVSLGSTDWK 180 PLKWSRSGSL SSRGSAYSSS TNSKNEKADL PLRVASPIES PSAETTACVT SSLPSEDAIS 240 RKKPRLGWGD GLAKYEKEKV EVPDGSLRKE VALLSSGSAE LTHSLGSNFA EKSPKTLPFS 300 DCASPATPSS FACSSSSGLE DKPFSKGASM DGMICSSPGS SSQNLQKLLS SIEMMEIGSI 360 ANLGSSLVEL FHSDDPSTVE SCFGKSTLNK LLAYKGEISK KLETTESEID SLENELKSLK 420 SGNGGNVSHK KSCSVTHLVE NVTYFKEQDG VSCVAPRPAP LVIVSSSDAT VEKMPVCKGD 480 MGVEDVDTKA DEIDSPGTVT SKFNEPSRVV KTVASDLVVN GHCSEVTDVI VPDKMEGNFP 540 VSRSFVDEHK TIGSDNECIL AKSCTKESIY GDLMAQAGSR SSLCDQIFAC NKEYASRAAE 600 VIFKKLPAEM CKISSKSTKI VSCSETEKLV KEKFLMRRQF FKFKESALTL RFKALQQSWK 660 EGLLHSVKKC RSRPQKKELS LRVSHSGHQK YRSSTRSRLV QQGACQNPTL NTEIAVRYSS 720 KLLLNPQIKL YRNSLKMPAM ILDKKEKMAL RFISHNGLVE DPCAVEKERN MINPWTSAER 780 EIFWEKLSLF GKDFKKISSF LDLKTTADCI QFYYKNHKSD SFKKNKNLEL GKQVKSSAIT 840 YLVTSGKKWN PDVNATSLDI LGVASVMAAQ ADYDIGNQQK CTRHLGMGRD VESKVSCSAS 900 TPSNKNNLDA LQTEKETVAA DVLAGICGSI SSEALSSCIT SAIDPSEDHR ERKCYKVDSA 960 VKLPSLSDVM QKTDNEEPCS DDSSEDVDSS NWTDEEKSIF MQAVSSYGKD FDMISRCIRS 1020 KSRDQCKVFF SKARKCLGLD LMHTSGDVGE TPGSGNDASG SGTDTEDHCI VEICGAHGSD 1080 EFVSKSINGV STSVNINHEE SVSAVTVNMR TSSEFEESTV LQQSDEKCAE AVGNLISEIS 1140 KEEDLPSPDS HSAYNLTNAA ASLSQPVHDH KIEGSSENTE GGSKCCNEPD ILRSESVSTV 1200 DENSAAVSEG RATAKLAFGG EEEGRNTNLH VQSILQCSVQ NSTGFDSNLA LEGSSLGLDP 1260 QILHPTVLKV EHVEKSCVES ENSLAVGNSD PGVIGREQML NQDMLSSTAV LQEVSDVHQK 1320 PMNRDDYAEH QNNLLHDSES KFPRSYPFNE QIFEDINRNI NRTYFPVVQG LSKPDINCNS 1380 SYVSEGHYLQ NCNSSKPHNP AELPFLPQNI DLGHDRQKKA SCSGSASDSD VPRRKGDVKL 1440 FGQILSHAPS EQNSSSGSNG GGEENHISSS KSCDIGENVP LRSYGFWDGS RIQTGLSALP 1500 DSAILQAKYP AAFSGYSATS VKTEQQPLQA LTNNGDRSLN GLVSAFPTKD GVVDYHSYRS 1560 RDGVKMRPFP VDIFSEMQRR NGFDGVSLSS LQQQGRVLVG MNVVGRGGIL MGGSCTGVSD 1620 PVAAIKMHYA KAEQYVGQPG STFTREDGSW RGGNGGDLGS R

Sequence ? help Back to Top

Protein Sequence Length: 1661 aa Download sequence Send to blast

MPPEPLPWDR KDLFKERKHE KSEAIGSAAR WRDSYHGSRE FNRWGSADFR RPTGHGKQGS  60
WHQFSEESSH GYGPSRSFSD RVLEDESFRP SVPRGDGRYI RIGREIRGSF SHRDWRSHSR  120
ETNNGFGNPS RRPSSASQDV SSDQRSVDDT VTYSSPQSVH GLENGPRSDV EVSLGSTDWK  180
PLKWSRSGSL SSRGSAYSSS TNSKNEKADL PLRVASPIES PSAETTACVT SSLPSEDAIS  240
RKKPRLGWGD GLAKYEKEKV EVPDGSLRKE VALLSSGSAE LTHSLGSNFA EKSPKTLPFS  300
DCASPATPSS FACSSSSGLE DKPFSKGASM DGMICSSPGS SSQNLQKLLS SIEMMEIGSI  360
ANLGSSLVEL FHSDDPSTVE SCFGKSTLNK LLAYKGEISK KLETTESEID SLENELKSLK  420
SGNGGNVSHK KSCSVTHLVE NVTYFKEQDG VSCVAPRPAP LVIVSSSDAT VEKMPVCKGD  480
MGVEDVDTKA DEIDSPGTVT SKFNEPSRVV KTVASDLVVN GHCSEVTDVI VPDKMEGNFP  540
VSRSFVDEHK TIGSDNECIL AKSCTKESIY GDLMAQAGSR SSLCDQIFAC NKEYASRAAE  600
VIFKKLPAEM CKISSKSTKI VSCSETEKLV KEKFLMRRQF FKFKESALTL RFKALQQSWK  660
EGLLHSVKKC RSRPQKKELS LRVSHSGHQK YRSSTRSRLV QQGACQNPTL NTEIAVRYSS  720
KLLLNPQIKL YRNSLKMPAM ILDKKEKMAL RFISHNGLVE DPCAVEKERN MINPWTSAER  780
EIFWEKLSLF GKDFKKISSF LDLKTTADCI QFYYKNHKSD SFKKNKNLEL GKQVKSSAIT  840
YLVTSGKKWN PDVNATSLDI LGVASVMAAQ ADYDIGNQQK CTRHLGMGRD VESKVSCSAS  900
TPSNKNNLDA LQTEKETVAA DVLAGICGSI SSEALSSCIT SAIDPSEDHR ERKCYKVDSA  960
VKLPSLSDVM QKTDNEEPCS DDSSEDVDSS NWTDEEKSIF MQAVSSYGKD FDMISRCIRS  1020
KSRDQCKVFF SKARKCLGLD LMHTSGDVGE TPGSGNDASG SGTDTEDHCI VEICGAHGSD  1080
EFVSKSINGV STSVNINHEE SVSAVTVNMR TSSEFEESTV LQQSDEKCAE AVGNLISEIS  1140
KEEDLPSPDS HSAYNLTNAA ASLSQPVHDH KIEGSSENTE GGSKCCNEPD ILRSESVSTV  1200
DENSAAVSEG RATAKLAFGG EEEGRNTNLH VQSILQCSVQ NSTGFDSNLA LEGSSLGLDP  1260
QILHPTVLKV EHVEKSCVES ENSLAVGNSD PGVIGREQML NQDMLSSTAV LQEVSDVHQK  1320
PMNRDDYAEH QNNLLHDSES KFPRSYPFNE QIFEDINRNI NRTYFPVVQG LSKPDINCNS  1380
SYVSEGHYLQ NCNSSKPHNP AELPFLPQNI DLGHDRQKKA SCSGSASDSD VPRRKGDVKL  1440
FGQILSHAPS EQNSSSGSNG GGEENHISSS KSCDIGENVP LRSYGFWDGS RIQTGLSALP  1500
DSAILQAKYP AAFSGYSATS VKTEQQPLQA LTNNGDRSLN GLVSAFPTKD GVVDYHSYRS  1560
RDGVKMRPFP VDIFSEMQRR NGFDGVSLSS LQQQGRVLVG MNVVGRGGIL MGGSCTGVSD  1620
PVAAIKMHYA KAEQYVGQPG STFTREDGSW RGGNGGDLGS R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	737	823	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	737	823	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446909.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103489481
TrEMBL	A0A1S3BG74	0.0	A0A1S3BG74_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103489481
STRING	XP_008446909.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-124	MYB family protein