PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020330
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 541aa    MW: 58531.6 Da    PI: 7.1722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020330genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09354402355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Cla020330 354 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 402
                58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.44E-11349406No hitNo description
SuperFamilySSF474591.02E-16349419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16352418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6354402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10357407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSSDWRFSEM TLTSMPIGLV LPGNVDVVRN QDMVGCSSST APVVESFSST IWEQAANCQN  60
LGICNIQGHN NSTTSNSIAM SKASGCPVSL SSDIDRTLDI SWNLSHNMLK GGVYLPNFPS  120
VIPPSLSQLP ADSSFIERAA RFSCFSGGNF GDIVGHFSIP EPIGVFSRGM GVIPERWDEI  180
PRNGLGSVFG TGGQFQRNMV NSESSKPLSL TNEHGATERG SPKNGSPLKW DDRGKHAVDG  240
SANESDEAEF SGHDGSGEPC TLEAPGKELS AKGLGSRKRK RSGQKTELDQ ANGPLQQTTV  300
SAKDDAETQR KGDQNPSSTA NKCTGKHNKQ VPQPSDPPKE EYIHVRARRG QATNSHSLAE  360
RVRREKISER MKFLQELVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD  420
INIDGLIAKD ILQSRVGPSS TLGFSSHMPI ACPPPHISHN GHIPSNFPAI GSSEMLRSTM  480
NSQMTTRSGG FKDPTQIKNV WDGELQNIVQ MSFGMSTTPN CLEIEGSIKT TPHDKNIQTA  540
P
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135136.10.0PREDICTED: transcription factor bHLH49 isoform X3
RefseqXP_011655727.10.0PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A0A0KR060.0A0A0A0KR06_CUCSA; Uncharacterized protein
STRINGXP_004135136.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-110bHLH family protein