PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020167
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 357aa    MW: 42001.1 Da    PI: 9.5411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020167genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.7e-1211103199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk+ ++    +++ l +p+kf++++  ++    + tl  ++g  W+++l  +k +g++ + +GW eFv+   ++ g f+vF+l+g  +f  +v +f++
  Cla020167  11 FFKIILHQTLIQQK-LEIPNKFVNNNA-DSLLYNKATLCLPDGANWKLQL--KKLDGKICFLRGWPEFVDFYSVQPGYFLVFQLKGICCF--NVLIFDT 103
                67777666666665.9*******7773.445667899999**********..9*999988888*********************999999..9999987 PP
2B3604.1e-19256353198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                f  ++ ps+  + + l++p+ f e++  k  es++++le  +gr W+v +  ++  +++r+ l++GWk+F+ +n+L+egD++vF+l+++  + +++v++f
  Cla020167 256 FMVTMRPSYIQTGNYLSMPRIFSERYI-K--ESVDVKLEVGDGRGWRVWCgvRWAFTRRRTELKSGWKRFAVDNELEEGDICVFELMNKtPKVHFHVTIF 352
                778999******************994.3..5799*************88667777888899************************98779999999999 PP

                - CS
         B3  98 r 98 
                r
  Cla020167 353 R 353
                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-184104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-194104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-149102No hitNo description
PROSITE profilePS5086310.84210104IPR003340B3 DNA binding domain
PfamPF023621.8E-911103IPR003340B3 DNA binding domain
SMARTSM010191.2E-1111104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22250353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-21251354IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-21254353No hitNo description
PfamPF023624.0E-17256353IPR003340B3 DNA binding domain
SMARTSM010191.9E-9256355IPR003340B3 DNA binding domain
PROSITE profilePS5086313.408256355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MALFSSPNPH FFKIILHQTL IQQKLEIPNK FVNNNADSLL YNKATLCLPD GANWKLQLKK  60
LDGKICFLRG WPEFVDFYSV QPGYFLVFQL KGICCFNVLI FDTSATEIDY PTRRPPILIP  120
KTENEDEEES VQILNQAVLK KRRREKDEEA AAYCSFRETK KIMRKNVKIK IEEHRGFTAP  180
QGFRDEDEDE DLERNYSRRQ SNYRGSAYNE RDDGRSSPES MRPLNPRKTP QVLTENQLVV  240
LRRARSFKCR TNNPSFMVTM RPSYIQTGNY LSMPRIFSER YIKESVDVKL EVGDGRGWRV  300
WCGVRWAFTR RRTELKSGWK RFAVDNELEE GDICVFELMN KTPKVHFHVT IFRLPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1225235445142B3 domain-containing transcription factor VRN1
4i1k_B4e-1225235445142B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148065.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0A0LM040.0A0A0A0LM04_CUCSA; Uncharacterized protein
STRINGXP_004148065.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein