PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020159
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 345aa    MW: 40674 Da    PI: 10.0021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020159genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.2e-1211103199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk+ ++   ++ + l lp+kf++++g ++    + tl  ++g  W++++  +k++ ++ + kGW eFv+   ++ g  +vF+l++  +f  +v +f++
  Cla020159  11 FFKIILHQTLTQ-RKLELPNKFVKNNG-DSLLYNKATLCLPDGAIWKLQF--KKSDAKICFLKGWPEFVQFYSIQPGHLLVFQLKSICCF--NVLIFDT 103
                666665555555.55********7775.456778999*************..99999999999********************9877999..9999986 PP
2B368.31e-21243339198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f  ++ ps+  + + l+lp+kf e++  k  es++++le  +grsW+v +  ++  +++r+ l++GWk+Fv++n+LkegD++vF+l++++   ++v +fr
  Cla020159 243 FMVTMRPSYIQTGNYLSLPRKFGERYI-K--ESMDMKLEVGDGRSWRVWCgvRWAFTRRRTELKGGWKRFVEDNELKEGDICVFELMNKNAVCFKVAIFR 339
                778999*******************94.3..689**************98667778888899***********************995544444777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-184103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-184104IPR015300DNA-binding pseudobarrel domain
CDDcd100177.05E-159102No hitNo description
PROSITE profilePS5086310.98310104IPR003340B3 DNA binding domain
PfamPF023621.1E-911102IPR003340B3 DNA binding domain
SMARTSM010194.0E-1211104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-25237339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-23238339IPR015300DNA-binding pseudobarrel domain
CDDcd100176.01E-25241339No hitNo description
PROSITE profilePS5086314.452243341IPR003340B3 DNA binding domain
PfamPF023623.4E-20243339IPR003340B3 DNA binding domain
SMARTSM010191.9E-13243344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALFSSPNPH FFKIILHQTL TQRKLELPNK FVKNNGDSLL YNKATLCLPD GAIWKLQFKK  60
SDAKICFLKG WPEFVQFYSI QPGHLLVFQL KSICCFNVLI FDTTATEIDY PMHQPPVLIP  120
KSENEDEEES VRIVNEAVLK KRRRENDKER AASCSLRETK KMMRKNAKMN KKHRELTSDE  180
DEEDLETNYS RRQSNYRESE GRVSPESMRP MNPRKMPQAL TENQLAVKKR ASWFKCRRKN  240
PSFMVTMRPS YIQTGNYLSL PRKFGERYIK ESMDMKLEVG DGRSWRVWCG VRWAFTRRRT  300
ELKGGWKRFV EDNELKEGDI CVFELMNKNA VCFKVAIFRL LNAEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457957.20.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0A0LMR60.0A0A0A0LMR6_CUCSA; Uncharacterized protein
STRINGXP_008457957.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-22B3 family protein