PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020158
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 233aa    MW: 26999.1 Da    PI: 10.3511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020158genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.8e-18431241698
                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  +pkkf++e+g k   + ++ l+  +g++W+v+l+ +++++++++ +GW++Fv+   +k g f+vFk++++ s+f  +v +f+
  Cla020158  43 KEIPKKFVREYGVKALLNDQICLKVADGKEWNVRLTKSNNGKGVWFHNGWQNFVEFYSVKLGYFLVFKYQNQsSSF--YVLIFD 124
                47*********99999999****************99999999**************************9766777..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2019125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2120133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2223124No hitNo description
SMARTSM010191.1E-1025126IPR003340B3 DNA binding domain
PfamPF023622.0E-1543124IPR003340B3 DNA binding domain
PROSITE profilePS5086312.33745126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MASSSRHRRN DVVKRPRKAS DNPHFFKVVL ADALEEQKHL QAKEIPKKFV REYGVKALLN  60
DQICLKVADG KEWNVRLTKS NNGKGVWFHN GWQNFVEFYS VKLGYFLVFK YQNQSSSFYV  120
LIFDLTAMEI EYPVKIIHLN EAKDKVKMET YFDDDLDLDF KVGKISLDAR KPMNSGQKPP  180
STGSQRARAM ENATAFQSTT LNPSFVSKIW PSHIHLGKFL MIAKNSRRIY FKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902156.12e-99PREDICTED: uncharacterized protein LOC103497524 isoform X1
TrEMBLA0A1S4E1Q24e-98A0A1S4E1Q2_CUCME; uncharacterized protein LOC103497524 isoform X1
STRINGXP_008457959.18e-97(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein