PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020157
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 331aa    MW: 38045.8 Da    PI: 10.151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020157genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.5e-189100199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffkvl  s++l+++ l +p kf++ hg ++ +s ++ l+  +g +W++ l  +k+ ++++l+kGW eFvk   ++ + fvvF+++g+s+f  +v +f+k
  Cla020157   9 FFKVL--SHTLTLQKLEVPTKFVRLHG-ETLQSEEVCLKVVNGVKWKIGL--EKSNQKVWLEKGWAEFVKFYSIDINFFVVFQYNGHSCF--HVLIFDK 100
                99***..****************9996.457999****************..**************************************..*****98 PP
2B355.31.2e-172443281398
                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +g l++p  f ++h ++   +k+  l+ ++g sW+v++  ++  + +r+ +++GW+ F+++n+LkegD++vF+l+++++ +++ ++fr
  Cla020157 244 RGYLCIPLAFGNTHLKN---TKEFNLQVSNGDSWKVTCveRWYSNIQRFEMGNGWRAFARDNNLKEGDICVFELIKNTQISFKATIFR 328
                4779*******999544...4589999***********7667888888***************************9988878888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-222101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-213101IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-19799No hitNo description
PROSITE profilePS5086311.9427101IPR003340B3 DNA binding domain
PfamPF023622.0E-159100IPR003340B3 DNA binding domain
SMARTSM010192.0E-139101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19226328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-19227328IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-17229328No hitNo description
SMARTSM010195.4E-12231330IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379232330IPR003340B3 DNA binding domain
PfamPF023621.5E-15243328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASSTPPHFF KVLSHTLTLQ KLEVPTKFVR LHGETLQSEE VCLKVVNGVK WKIGLEKSNQ  60
KVWLEKGWAE FVKFYSIDIN FFVVFQYNGH SCFHVLIFDK TATGIQYPSA SRELNKNISE  120
HREREENGCF QILGNNQRSK KEDKTQILHS PTPKTMKRSD QACGSKVISK KVELKKDHFH  180
SSDQLNIDLK PNQLRNKVKC LKKKPSIATK EARINNEKAS EFKSLTKVPS FMVTIGTSYL  240
DTGRGYLCIP LAFGNTHLKN TKEFNLQVSN GDSWKVTCVE RWYSNIQRFE MGNGWRAFAR  300
DNNLKEGDIC VFELIKNTQI SFKATIFRLG I
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-33B3 family protein