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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla020156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | B3 | ||||||||
Protein Properties | Length: 170aa MW: 19950.2 Da PI: 8.4432 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.8 | 9.6e-19 | 33 | 127 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 fkv +d+l+++ l +p+kf++e+g k + ++ l+ +g++W++ l+ +++++r++l +GW++Fv+ +k g f+vFk++ + s+f +v +f+ Cla020156 33 FKVV-LADALREQKLEIPRKFVREYGVKALLNDQICLKVADGKEWNLGLTKSNNGRRVWLHNGWQNFVEFYSVKLGYFLVFKYQIQcSSF--YVLIFD 127 5544.479999999***********99999999*************************************************98655777..999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.29E-21 | 28 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 28 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-23 | 30 | 127 | No hit | No description |
PROSITE profile | PS50863 | 12.943 | 31 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-16 | 32 | 127 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-16 | 32 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MLKFLKEELP VMPSSSHRPN DLVCKAWDNP HFFKVVLADA LREQKLEIPR KFVREYGVKA 60 LLNDQICLKV ADGKEWNLGL TKSNNGRRVW LHNGWQNFVE FYSVKLGYFL VFKYQIQCSS 120 FYVLIFDLTA TEIEYPMNKI RLDDAEKKVK METSLIDLDQ VSYSQGMFLV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457959.1 | 4e-67 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
Refseq | XP_016902156.1 | 1e-66 | PREDICTED: uncharacterized protein LOC103497524 isoform X1 | ||||
TrEMBL | A0A1S3C7C6 | 1e-65 | A0A1S3C7C6_CUCME; putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A1S4E1Q2 | 3e-65 | A0A1S4E1Q2_CUCME; uncharacterized protein LOC103497524 isoform X1 | ||||
STRING | XP_008457959.1 | 2e-66 | (Cucumis melo) | ||||
STRING | XP_008457960.1 | 2e-65 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-23 | B3 family protein |