PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla020073

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 206aa MW: 22431.9 Da PI: 7.6329

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020073	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.4	8.7e-42	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r+da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Cla020073 55 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAE 154 7**********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-42	55	152	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MAYVAKCSNS PPTPITVPNP LSFSPMSSSS TATNFASPPT SQPSSPPPPA VVLSPCAACK 60 ILRRRCVEKC VLAPYFPPTE PLKFTIAHRV FGASNIIKFL QELPESQRTD AVSSMVYEAN 120 ARLRDPVYGS AGAICQLQKQ VSELQAQLAK ARAEVANMQQ QQANLLALIC MEMRQSPEPV 180 WPPQLIDTAC FLDDATLSSP WEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-40	54	155	10	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-40	54	155	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	8e-92	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	8e-92	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023532963.1	1e-118	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S3BDP1	1e-108	A0A1S3BDP1_CUCME; LOB domain-containing protein 1-like
STRING	XP_004143693.1	1e-115	(Cucumis sativus)
STRING	XP_004172387.1	1e-115	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-60	LOB domain-containing protein 1