PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020042
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 281aa    MW: 30693.9 Da    PI: 6.9786
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020042genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-101255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ e d+ + +a + ++ +   +W++Ia  ++ g+tl+++k+++ 
        Cla020042 12 WSREQDKAFENALATYPEDaldRWEKIAGNIP-GKTLEDIKEHYE 55
                     ********************************.**********95 PP
2Myb_DNA-binding42.61.4e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
        Cla020042 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-5558IPR009057Homeodomain-like
PROSITE profilePS512938.269762IPR017884SANT domain
SMARTSM007171.6E-8860IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-111066IPR009057Homeodomain-like
CDDcd001673.47E-91258No hitNo description
PfamPF002492.6E-71255IPR001005SANT/Myb domain
PROSITE profilePS5129418.318115171IPR017930Myb domain
SuperFamilySSF466891.66E-16117172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-11119165IPR009057Homeodomain-like
SMARTSM007171.9E-11119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.0E-17120169IPR006447Myb domain, plants
PfamPF002491.5E-11122166IPR001005SANT/Myb domain
CDDcd001677.24E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTVDEKSKSS IWSREQDKAF ENALATYPED ALDRWEKIAG NIPGKTLEDI KEHYELLVDD  60
VNQIESGFVP LPSYSFSSDG SPSHASEEGT GKKGDNHGLD KSESHFGSRA PRSDQERRKG  120
TAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRA  180
SIHDITSVDN GDVSAPQGPI TGEANSYGGG STKKSTKQPP QPPTGSFGVR IYGASTVGQP  240
IGGPFVSAVG TPVNTPPPAH MEYAVSSLVT RPPVNMSPIT Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1712741173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-152LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-152LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147105.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_011655501.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_011655502.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_011655503.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-106SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0A0KV250.0A0A0A0KV25_CUCSA; Uncharacterized protein
STRINGXP_004147105.10.0(Cucumis sativus)
STRINGXP_004166357.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-97MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]