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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cla020042 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
MYB |
Protein Properties |
Length: 281aa MW: 30693.9 Da PI: 6.9786 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla020042 | genome | ICuGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 32 | 2.8e-10 | 12 | 55 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
W+ e d+ + +a + ++ + +W++Ia ++ g+tl+++k+++
Cla020042 12 WSREQDKAFENALATYPEDaldRWEKIAGNIP-GKTLEDIKEHYE 55
********************************.**********95 PP
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2 | Myb_DNA-binding | 42.6 | 1.4e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky
Cla020042 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
7*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MTVDEKSKSS IWSREQDKAF ENALATYPED ALDRWEKIAG NIPGKTLEDI KEHYELLVDD 60 VNQIESGFVP LPSYSFSSDG SPSHASEEGT GKKGDNHGLD KSESHFGSRA PRSDQERRKG 120 TAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRA 180 SIHDITSVDN GDVSAPQGPI TGEANSYGGG STKKSTKQPP QPPTGSFGVR IYGASTVGQP 240 IGGPFVSAVG TPVNTPPPAH MEYAVSSLVT RPPVNMSPIT Y
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681896 | 1e-152 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. |
GenBank | LN713264 | 1e-152 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |