PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cla019973

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TALE

Protein Properties

Length: 389aa MW: 44033.6 Da PI: 5.0367

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019973	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.8	4.4e-09	314	348	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ee+ +L+ +gL+++q+ +WF N+R ++ Cla019973 314 KWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRH 348 569*****************************885 PP
2	ELK	34.4	4.7e-12	268	289	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++Ll+KYsgyL+sLk+EF+ Cla019973 268 DLKEMLLKKYSGYLSSLKKEFL 289 6********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.1E-21	58	102	IPR005540	KNOX1
Pfam	PF03790	5.7E-21	60	101	IPR005540	KNOX1
SMART	SM01256	1.8E-21	105	156	IPR005541	KNOX2
Pfam	PF03791	1.1E-20	109	155	IPR005541	KNOX2
SMART	SM01188	5.9E-6	268	289	IPR005539	ELK domain
Pfam	PF03789	3.3E-9	268	289	IPR005539	ELK domain
PROSITE profile	PS51213	10.947	268	288	IPR005539	ELK domain
PROSITE profile	PS50071	12.179	288	351	IPR001356	Homeobox domain
SMART	SM00389	4.2E-11	290	355	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-18	290	360	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-25	293	351	IPR009057	Homeodomain-like
CDD	cd00086	7.48E-12	300	351	No hit	No description
Pfam	PF05920	1.3E-16	308	347	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	326	349	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MDEFYRLSNS VIASYSNGVV GGEAIASTSC GGIHEALMVD NDMLQLEAEA TTGLNMSDMI 60 KTQIVNHPLY PKLVSAYIEC QKVGAPPQVA SLLEEIGREN HPPRSSIELG ADPQLDNFME 120 SYCEVLHQYK NELSKPFDEA TMFLTNIELE LSNLCKGSFT VTSDSRSAMN AFVLATIFGR 180 RNGVDNDGRY HYPFCNDESC IYYSKESYSF FGESTSKEEW KLIKALEWEG KGMRYEVAGT 240 PEEEPSSYGE VEMPGNHESF CTQKTNQDLK EMLLKKYSGY LSSLKKEFLK KRKKEKLPKD 300 ARMALFDWWN THYKWPYPTE EEKSKLSVVT GLDQKQINNW FINQRKRHWK PPEDMRFVLM 360 DGAGAGAGAG ECIKGSNFYD NGETGGHVI

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MDEFYRLSNS VIASYSNGVV GGEAIASTSC GGIHEALMVD NDMLQLEAEA TTGLNMSDMI  60
KTQIVNHPLY PKLVSAYIEC QKVGAPPQVA SLLEEIGREN HPPRSSIELG ADPQLDNFME  120
SYCEVLHQYK NELSKPFDEA TMFLTNIELE LSNLCKGSFT VTSDSRSAMN AFVLATIFGR  180
RNGVDNDGRY HYPFCNDESC IYYSKESYSF FGESTSKEEW KLIKALEWEG KGMRYEVAGT  240
PEEEPSSYGE VEMPGNHESF CTQKTNQDLK EMLLKKYSGY LSSLKKEFLK KRKKEKLPKD  300
ARMALFDWWN THYKWPYPTE EEKSKLSVVT GLDQKQINNW FINQRKRHWK PPEDMRFVLM  360
DGAGAGAGAG ECIKGSNFYD NGETGGHVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	292	LKKEFLKKRK
2	289	293	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:10488233}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-101	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-101	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022946412.1	1e-163	homeobox protein knotted-1-like 1 isoform X1
Refseq	XP_022946413.1	1e-163	homeobox protein knotted-1-like 1 isoform X1
Swissprot	A2Y007	2e-47	KNOSA_ORYSI; Homeobox protein knotted-1-like 10
Swissprot	Q7GDL5	2e-47	KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBL	A0A0A0LGZ6	1e-121	A0A0A0LGZ6_CUCSA; Uncharacterized protein
STRING	XP_004158713.1	1e-122	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF620	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70510.1	5e-37	KNOTTED-like from Arabidopsis thaliana 2

Publications ? help Back to Top
Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012] Xu Y, et al. OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice. Plant J., 2015. 83(5): p. 806-17 [PMID:26121094] Kir G, et al. RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture. Plant Physiol., 2015. 169(1): p. 826-39 [PMID:26162429]