PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019764
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 293aa    MW: 32885.5 Da    PI: 6.4018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019764genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10203246755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Cla019764 203 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 246
                5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-12193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-14194254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-11194250No hitNo description
PROSITE profilePS5088815.294196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7204246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALANSALQE LDGMEKNGGY LKTLAIGKGH ENPNSNFVFR NTTNYQLDQQ QQQQQQQQSL  60
INFKCGIDNT ILGDKMNNNE SLLSFDAQGI CQLDQTYNWD DQQRVMEDPN CFQTATNHNN  120
YSPSKDHHNK NGDNGSVYEW LYSEPTTHFS DAIQEAEATQ EIIANHKRSH TGESSGSVCK  180
KQCTVAAKKQ KPKSSTAKDP QSIAAKNRRE RISERLKILQ ELVPNGSKVD LVTMLEKAIS  240
YVKFLQLQVK ILATDEFWPV EGGKAPDISQ VKEAIDVILS SQRERSSSSN SEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818935e-51LN681893.1 Cucumis melo genomic scaffold, anchoredscaffold00055.
GenBankLN7132635e-51LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140364.11e-166PREDICTED: putative transcription factor bHLH086
TrEMBLA0A0A0KN551e-164A0A0A0KN55_CUCSA; Uncharacterized protein
STRINGXP_004140364.11e-165(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-59RHD SIX-LIKE 1